Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5270
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.039
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   0.64 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   4.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   4.5  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   4.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   5.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   5.9  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   5.9  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    20   5.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    20   5.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   7.8  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   7.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.5 bits (58), Expect = 0.039
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -1

Query: 239  HQGLHGTHLGHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 108
            H G  G  +GH      H+R G + +     R    P    G+G
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSG 1798


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 0.64
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -1

Query: 239 HQGLHGT-HLGHEVEQRVHNRQGHEGVHL---AAARQGHPPHH 123
           H  +H T H  H      H++      H    AA + GH PHH
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 236 DVHNVKGAGMSLAGHD 283
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 206 EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 81
           E  QR H+ Q H     + A Q H   +++   Q  R Q R+
Sbjct: 136 ETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ 177



 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 200  EQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQ 105
            +Q+ H  +  EGV    A       + RGA Q
Sbjct: 1230 QQQQHQAREREGVGAGIAETSAGTSNSRGAAQ 1261


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 160 CTPSCPCRL 186
           C P C CRL
Sbjct: 67  CAPGCVCRL 75


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 160 CTPSCPCRL 186
           C P C CRL
Sbjct: 67  CAPGCVCRL 75


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 270 RDIPAPLTLCTSRTPRDT 217
           RD+P   T  T+   RDT
Sbjct: 137 RDLPGKSTTTTAEVKRDT 154


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 146 RQGHPPHHRRGAG 108
           RQG P HH   AG
Sbjct: 58  RQGVPGHHYGAAG 70


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 173 ALADYEHVVQPHGQGVSRGVL 235
           +L +Y HV  P G   S   L
Sbjct: 506 SLTEYHHVAPPSGHHASSAPL 526


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 148 RGKGIRLTIAEERDKR 101
           RGK I L   EE DKR
Sbjct: 190 RGKKIILDALEELDKR 205


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 148 RGKGIRLTIAEERDKR 101
           RGK I L   EE DKR
Sbjct: 190 RGKKIILDALEELDKR 205


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 148 RGKGIRLTIAEERDKR 101
           RGK I L   EE DKR
Sbjct: 190 RGKKIILDALEELDKR 205


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 79  ARRPWLRCACP 111
           ++ P L CACP
Sbjct: 55  SKSPLLSCACP 65


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 79  ARRPWLRCACP 111
           ++ P L CACP
Sbjct: 55  SKSPLLSCACP 65


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -1

Query: 224 GTHLGHEVEQRVHNRQGHEGVHLAAARQG 138
           G H  H V  R   ++G E V L     G
Sbjct: 351 GNHDNHRVASRFGRQRGDEIVMLTLTLPG 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,181
Number of Sequences: 438
Number of extensions: 1803
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)