Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5269
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    30   0.28 
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    26   4.6  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   8.0  

>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 545 PKRNYQWFIGHGFQRFLLYRVDRFFLLFIYLHRR 444
           P++NY W +G+G   F+L  V    L  ++L++R
Sbjct: 215 PEKNYGWRLGYGIWAFILPTVSLPLLASLFLNQR 248


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
 Frame = -2

Query: 330 TGYMRMKSQSYAVRSFKPKAYLHRGSQLLVAMHFCRETRVPNSKEDCLIIDMTSLFGLFN 151
           TG +      +  + F+PK  +   S     + + R  ++ +S    L++DM  + GL +
Sbjct: 164 TGLIDYDMLEHDAQLFRPKILVAGTSAYCRLIDYARMRQIADSVNAYLVVDMAHISGLVS 223

Query: 150 LNNLKATF*LA-----TNRNPYLNPRV*MTFF 70
              + + F  A     T       PR  M FF
Sbjct: 224 AGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 255


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 151 SKQFESHLLTCHKQESLP*SQGLNDFFF 68
           ++  E  ++ CH   S    Q  NDFFF
Sbjct: 265 NRAIEGFVIRCHSDHSSLEQQSSNDFFF 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,614
Number of Sequences: 5004
Number of extensions: 56281
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)