Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5269
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical...    28   7.5  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   9.9  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   9.9  

>AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical
           protein Y37D8A.17 protein.
          Length = 271

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 304 LRLHSHVSGEVTLRNV*ASLIIIKNYFYGLVYS 402
           LRLH+ + G+  L       +II++ F+ LVYS
Sbjct: 92  LRLHTRIQGQFALNAQFIQRLIIEDSFHYLVYS 124


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 630 SQLGRMSLSDVNYNTS*RFGHVVW**KCPQKKLSMVYWSRISTLPTVSR 484
           S L ++   DV+ N   +    +W   CP  K     ++R+STLP V+R
Sbjct: 602 SSLPQLQQLDVSKNELSQLPEYIW--LCPALKELNASYNRLSTLPMVAR 648


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 630 SQLGRMSLSDVNYNTS*RFGHVVW**KCPQKKLSMVYWSRISTLPTVSR 484
           S L ++   DV+ N   +    +W   CP  K     ++R+STLP V+R
Sbjct: 600 SSLPQLQQLDVSKNELSQLPEYIW--LCPALKELNASYNRLSTLPMVAR 646


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,622,414
Number of Sequences: 27780
Number of extensions: 310661
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)