Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5267
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    33   0.027
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.0  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   3.1  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    26   4.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.2  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   4.2  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    26   5.5  
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos...    25   7.3  
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi...    25   7.3  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   7.3  
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos...    25   7.3  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   7.3  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   7.3  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.6  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   9.6  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   9.6  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +1

Query: 235 KFSLSILSWT*IRVVFVTSHPSAPNTPMSSSWSRLAV---GLKAAPSTHTWWPR--RALG 399
           KF +S++S+   R   + S+P   NTP++       V   G     S H +WP+   +LG
Sbjct: 193 KFMVSLISFMEKRGTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNFWPKISASLG 252

Query: 400 CPSSEALS 423
            PS +A+S
Sbjct: 253 FPSPDAIS 260


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 23/82 (28%), Positives = 41/82 (50%)
 Frame = +1

Query: 283 VTSHPSAPNTPMSSSWSRLAVGLKAAPSTHTWWPRRALGCPSSEALSTS*RNMTSTVWIS 462
           V S  S+P++  SS+ +  ++   + PST       +    +S +LS+S  + T++   S
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPST------SSSSSSTSSSLSSSSSSSTASSSSS 268

Query: 463 TGSIPVPPTGVAPSPIKTSSCI 528
           + SI    +  + SP  TSS I
Sbjct: 269 SSSIISSSSSSSSSPTSTSSTI 290


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
 Frame = +3

Query: 156 YGIEDIPVDLCT--HLIYSFIGVTEKSSEVLIIDPELDVDKSGFRNFTSLRSKHP----- 314
           +G ED  V L T  H    ++ +    + + +  P  D D S    F      HP     
Sbjct: 116 FGTEDDLVSLITAAHKAGIWVMLDSIVNSMALAPPLADADYSSLNPFNKESYFHPYCLID 175

Query: 315 -DV--KFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 464
            D+       +  W + G   + +  + S   S++       + KYDFDGL +D
Sbjct: 176 WDITDNETNVMDCWQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 306 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 404
           +HP  KF+V VGG+     ++ H    K T  S
Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = +1

Query: 286 TSHPSAPNTPMSSSWSRLAVGLKAAPSTHTWWPRRALGCPSSEALSTS*RNMTSTVWIST 465
           T + + P TP     S  +      P++ +     + G  SS  LSTS    TST    T
Sbjct: 348 TGNSTTPVTPTVPPTSTSSTSTPPPPASTS-----STGTSSSPLLSTSTSCTTSTSIPPT 402

Query: 466 GSIPVPPTGVAP-----SPIKTSSC 525
           G+   P T   P     +P+ T++C
Sbjct: 403 GNSTTPVTPTVPPTSSSTPLTTTNC 427


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 384 QKSTRMSFIRSVVDFLKKYDFDGLDLD 464
           +   R  F   V D +K+Y FDG+ LD
Sbjct: 190 KNEVRKFFQNWVSDLIKRYQFDGIRLD 216


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 7   TNRNC*KCERYLRRWLSWRVAP 72
           T  +C +CERY++   +W +AP
Sbjct: 58  TVNHCRECERYMQPPNNWMIAP 79


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +3

Query: 411 RSVVDFLKKYDFDGL------DLDWEYPGAADRGGSFSDKDEFLYFRPRV 542
           + V   L +Y F G+       LDWE+  + DRG    D   FL   PR+
Sbjct: 90  KGVTCILDRYAFSGIAFSAAKGLDWEWCKSPDRGLPRPDLVIFLNVDPRI 139


>SPAC212.01c |||S. pombe specific DUF999 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 36  IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206
           I A L  ++A+   ++    +    + YF +WA+Y+  +   G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249

Query: 207 FIGVTEKSSEVLI 245
             G T   SE  +
Sbjct: 250 HNGETALHSETTV 262


>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
           10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 36  IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206
           I A L  ++A+   ++    +    + YF +WA+Y+  +   G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249

Query: 207 FIGVTEKSSEVLI 245
             G T   SE  +
Sbjct: 250 HNGETALHSETTV 262


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 74  CGATRQDSQRRKYRSHFQQLR 12
           CG TR   Q++  R  F+QLR
Sbjct: 422 CGKTRSPHQKKPLRVEFRQLR 442


>SPAC750.06c |||S. pombe specific DUF999 protein family
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 36  IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206
           I A L  ++A+   ++    +    + YF +WA+Y+  +   G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249

Query: 207 FIGVTEKSSEVLI 245
             G T   SE  +
Sbjct: 250 HNGETALHSETTV 262


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 102 RIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLI-YSFIGVTEKSSEVLIIDPELDVDKSG 278
           R +  F NW + RP    Y I +    L  +L     + + EK    ++++  +  D+  
Sbjct: 28  RYIVPFKNWVIGRPDRKEYAIRNGAPKLLLNLFSLENLSMNEKYQVFVVLNSLMSEDQDP 87

Query: 279 FRNF 290
           F  F
Sbjct: 88  FVQF 91


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 458 IQTVEVIFLQEVDNASD 408
           + TVE+  LQE++NASD
Sbjct: 223 LDTVELHLLQEIENASD 239


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 195 SGYTN-PRGCLRCHNVRRRVGTPPNY*SNKRCALC 94
           SGY +  R C RCH+ R+++    N+  + R   C
Sbjct: 92  SGYDSYHRECFRCHDCRKQI-IDSNFKRDNRTIFC 125


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +1

Query: 301 APNTPMSSSWSRLAVGLKAAPSTHTWWPRRALGCPSSEALSTS*RNMTSTVWISTGSIPV 480
           AP +  +SS      GL   P++    P        +   ++S  N TS +  S+ S P+
Sbjct: 646 APTSTFTSSGFNTTSGL---PTSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSASTPL 702

Query: 481 PPTGVAPSPIKTSS 522
             + VAP+   TSS
Sbjct: 703 SNSTVAPTSTFTSS 716


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 225 KSSEVLIIDPELDVDKSGFRNFTSLRSK 308
           KS + L  DP L+  K+GF  F S  SK
Sbjct: 530 KSVKTLQADPSLEFAKAGFEIFPSNLSK 557


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -1

Query: 625 SLHQPEISKRYGSSQLPIL--YRL**TPSLTLGRKYKNSSLSEKEPP 491
           S ++  I +R  S   PI   Y     PSL LG      SLS  +PP
Sbjct: 406 SFNKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPHSLSPSQPP 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,922
Number of Sequences: 5004
Number of extensions: 57196
Number of successful extensions: 164
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)