Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5267
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 48 9e-06
04_03_0649 - 18402976-18403220,18403305-18404499 42 6e-04
10_08_0011 + 14088375-14089241 33 0.20
10_08_0009 + 14075929-14076789 31 1.1
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 29 2.5
03_06_0754 - 36025579-36027000 29 3.3
10_08_0007 + 14044844-14045767 28 5.7
09_03_0040 + 11816056-11819069,11819837-11820428 28 5.7
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141... 28 5.7
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 28 7.5
03_02_0163 - 6056959-6058989 28 7.5
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 27 9.9
04_04_0339 - 24513699-24516827 27 9.9
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 27 9.9
01_03_0028 - 11783122-11783381,11783668-11784163 27 9.9
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 47.6 bits (108), Expect = 9e-06
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Frame = +3
Query: 141 PGVGRYG-IEDIPVDLCTHLIYSFIGVTEKSSEVLIIDPELDVDKSGFRNFTS-LRSKHP 314
P Y + I L +HL YS + + E + + P + S NF+S ++S
Sbjct: 48 PSSSHYSPLGSIDTSLYSHLYYSSLSIDE--TRCAVAPPSSGEESSILSNFSSSIKSSGG 105
Query: 315 D--VKFMVAVGG--WAEGGSK--YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 476
VK ++++G + E S +S M ++K+ R +FI S ++ + FDGLDL W +P
Sbjct: 106 GFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 41.5 bits (93), Expect = 6e-04
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Frame = +3
Query: 171 IPVDLCTHLIYSFIGVTEKSSEVLIIDPELDVDKSGFRNFT-SLRSKHPDVKFMVAVG-G 344
+ + THL Y + V + L++ P+ S +F+ ++++K+ VK ++++G G
Sbjct: 59 LDASMYTHLYYYAVAV-HPARRTLLLPPD-PAAASLLGDFSRAVKAKNAAVKTVLSIGRG 116
Query: 345 WAEGGSK----------YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYPGAA 485
GG+ ++ M A ++R +FI + V ++ FDGLD+ W +P +A
Sbjct: 117 GGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFPASA 173
>10_08_0011 + 14088375-14089241
Length = 288
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +3
Query: 243 IIDPELDVDKSGFRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRS 416
+ P D + ++++ HP+V MV +GG + + + + S + + S
Sbjct: 56 VFSPYWDTANLSPADVAAVKAAHPNVSVMVGLGGDSVQDTAKVFFSPTSVDSWVANAVAS 115
Query: 417 VVDFLKKYDFDGLDLDWEYPGAADRGGSFSD 509
V + Y DG+D+D+E+ D GG+ D
Sbjct: 116 VSGIIDAYGLDGVDVDYEH--FNDDGGAGVD 144
>10_08_0009 + 14075929-14076789
Length = 286
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 300 RSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVD----FLKKYDFDGLDLDW 467
++ HP++ ++A+GG + + A S+ +++R+ D + Y DG+D+D+
Sbjct: 75 KAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGLDGVDVDY 134
Query: 468 EY 473
E+
Sbjct: 135 EH 136
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/74 (33%), Positives = 34/74 (45%)
Frame = +1
Query: 286 TSHPSAPNTPMSSSWSRLAVGLKAAPSTHTWWPRRALGCPSSEALSTS*RNMTSTVWIST 465
+S P+A ++P SSSW L L AA S+ + SS A + S M S +
Sbjct: 17 SSSPTAASSPPSSSWIHLRSLLVAAASSSS--------SASSSAAAGSSVAMVSASAPAA 68
Query: 466 GSIPVPPTGVAPSP 507
S P P AP+P
Sbjct: 69 SSSPSPSPAPAPAP 82
>03_06_0754 - 36025579-36027000
Length = 473
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 244 LSILSW-T*IRVVFVTSHPSAPNTPMSSSWSRLAVGLKA 357
++I SW T +R ++S PS P++ SSSW VG+ A
Sbjct: 1 MAIESWLTKVRSAIISSKPS-PSSSSSSSWRSKTVGILA 38
>10_08_0007 + 14044844-14045767
Length = 307
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 294 SLRSKHPDVKFMVAVGGWAEGGSK-YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWE 470
S++ +P+V+ V++GG + ++ + S + + S+ ++ + DG+D+D+E
Sbjct: 95 SIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQDNNLDGIDIDYE 154
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 481 PPTGVAPSPIKTSSCIFVQELKRAFIXADRGWEADCCRTAC*FQADGGIPCTKTVSG 651
PP AP+P ++ + + +KR + A R W C R F A P T V+G
Sbjct: 6 PPPPPAPAPAGLAAWLVARGVKRRAVSAKRSWPPLCGR----FPAPPPPPPTAPVAG 58
>03_02_0687 +
10413338-10413430,10413538-10413934,10414040-10414168,
10414370-10414517,10414647-10415925
Length = 681
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 491 PVGGTGILPVEIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAF 351
PV GT + V V I Q+ + E HP + G+H VL F
Sbjct: 550 PVKGTKLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGF 596
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 309 HPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSF 407
+P ++ A GG GG+ YSH A + +F
Sbjct: 93 YPTSHYLAAAGGAGGGGNPYSHFTAAAAAGSTF 125
>03_02_0163 - 6056959-6058989
Length = 676
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 355 AAPSTHTWWPRRALGCPSSEALSTS*RNMTSTVWISTGSIPVPPTGVAPSPIKTSS 522
A+PS+ WP RA+ S + + S +T +S P PP+ PSP ++S+
Sbjct: 2 ASPSSLLSWPHRAISL-SFQPKNPS--PSPATARVSVQDPPPPPSDANPSPGRSSN 54
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 336 VGGWAEGGSKYSHMVAQKSTRMSFIRSVV 422
+ GW G + H++ TR+SFIRS++
Sbjct: 225 MAGWDTEGP-FKHLLVMNPTRVSFIRSIL 252
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 159 GIEDIPVDLCTHLIYSFIGVTEKSS-EVLIIDP--ELDVDKSGFRNFTSLRSKH 311
GIE++ + CT LI G+ S L I L+ +NFTSLRS H
Sbjct: 965 GIEELHISRCTELISLPHGMQHLSFLRTLTITECTNLETFPEWLKNFTSLRSLH 1018
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 192 HLIYSFIGVTEKSSEVLIIDPELDVDKSGFRNFTSLRSKH 311
H + ++ +T KSS L +DP++ V++S ++ H
Sbjct: 1490 HSAWGYLDLTPKSSSELSLDPKVAVERSELMLLRAMLQSH 1529
>01_03_0028 - 11783122-11783381,11783668-11784163
Length = 251
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 426 FLKKYD-FDGLDLDWEYPGAADRGGSFSDKD 515
F+ K++ DG D DW++P AD F D D
Sbjct: 187 FVGKHNKMDGSDYDWDWPHTADVYYRFFDPD 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,735,600
Number of Sequences: 37544
Number of extensions: 441596
Number of successful extensions: 1374
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -