Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5266
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    26   4.4  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    26   5.9  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    25   7.8  

>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 612 GTKQTDKNCKKCYFGVCTVFIIYS*ACSKKRLLQ 511
           GT   ++N KKC F   ++FI    A S   LLQ
Sbjct: 11  GTDFLNRNFKKCLFACISIFIFALLALSFLSLLQ 44


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = -3

Query: 620 D*PEPNRQTKIVKNVILVYVPYLLYIHKHVVKSGYFNITNRHSNFIYMYRFTASMLFISW 441
           D P    Q +++KN+ L  +  + ++H H    G ++   +  NF+       S L +  
Sbjct: 103 DFPNAKNQPEMIKNIFLQIIDGVAHLHSH----GIYHRDLKPENFLLSLSEDGSELVVKI 158

Query: 440 YQNNLLC 420
               L C
Sbjct: 159 SDFGLAC 165


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 675 YQYPLSVKVPSKSVQPFQRLAGTKQTDKNCKKCYF 571
           YQ+ LS++  S+   PFQ L G  Q+D + K   F
Sbjct: 8   YQHHLSLESASREYGPFQML-GRIQSDSDIKMLSF 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,159
Number of Sequences: 5004
Number of extensions: 59377
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)