Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5264
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    29   0.55 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.2  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   2.2  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    27   2.2  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.9  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    27   2.9  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   3.9  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   5.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   5.1  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    26   5.1  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.8  

>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 558 GNRHQHGTTAGNRHQHV-TTFDSRSPAVPGWGTSRHQPFTDVTIAENLC 701
           GN+  +   A  R+  + +T+D  S  V G+G +R++ F     A+  C
Sbjct: 3   GNKRAYYAVARGRNTGIYSTWDEASDQVKGYGGNRYKKFDSYEAAQEFC 51


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 618 QMLSHVDDGCQRLSHADDGCQQLSHADDGCQRLSYLDDGCQRMSHLDDRC 469
           ++LS     C++L H D  C+     + G +R+ Y +  CQ   H    C
Sbjct: 704 KLLSCKTHFCEKLCHPDGECESSCKKECGKRRM-YCEHVCQSPCHAGHPC 752


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = +3

Query: 447 HQHVTTAGNGHQDVTSAGNRHQDMTAAGNRHQHGTTAGNRHQHGTTAGNRHQHVTTFDSR 626
           H  V      H D +S  +RH D TA   ++QHGT       H       H +    +S 
Sbjct: 547 HFEVPDLKMNHHD-SSFFDRHIDQTAMPGQNQHGTVKNMETMH-------HFYPDVHNSE 598

Query: 627 SPAVP 641
            PA P
Sbjct: 599 FPAAP 603


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 441 NRHQHVTTAGNGHQDVTSAGNRH 509
           N H  +TT  NGH  + ++GN H
Sbjct: 303 NTHPFLTTLANGHGVMDASGNHH 325


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 468 GNGHQDVTSAGNRHQDMTAAGNRHQHGTTAGNRH--QHGTTAGNRHQH 605
           GNG  D+    ++ +  T AG++ + G  + NRH    G+ +G  H H
Sbjct: 241 GNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHH 288


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 552 LSHADDGCQRLSYLDD--GCQRMSHL-DDRCRRLSHADDGCQRLSDRGSVVLS 403
           +S  DDG   L YL+D  G  +   + ++  + LS++DD C     R  +VLS
Sbjct: 281 ISEGDDGL--LEYLEDIIGTSKYKPIIEENMQELSNSDDICAEKESRLKLVLS 331


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 497 WQPSSRYDSRWQPS 538
           W PS+++D+RW P+
Sbjct: 444 WLPSTKFDNRWSPT 457



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 557 WQPSSAWDNRWQPS 598
           W PS+ +DNRW P+
Sbjct: 444 WLPSTKFDNRWSPT 457


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 489 TSAGNRHQDMTAAGNRHQHGTTAGNRHQ-HGTTAGNRHQHVTT 614
           TS  NRH+       R  H   +  RH+ + T     H+H TT
Sbjct: 129 TSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTT 171


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 504 RHQDMTAAGNRHQHGTTAGNRHQHGTTAGNRHQHVTTFD--SRSPAVPGWGTS 656
           RH   TA G  H   T  GN    G + G R + VT  +  +  P +  W  S
Sbjct: 284 RHLIATAFGLTHTFNTKVGNDFVRGVSGGER-KRVTISEGFATRPTIACWDNS 335


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 526  LATVISMGQLLATVISMGQPLATVINM 606
            L +VI  GQLL++ + +G  L TVI +
Sbjct: 1435 LVSVIKCGQLLSSKLRLGPLLTTVIKL 1461


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = +3

Query: 429 TTAGNRHQHVTTAGNGHQDVTSAGNRHQDMTAAGNRHQHGTTAGNRHQHGTTAG 590
           +T GN     TT+   H      G      T AGN H         H    +AG
Sbjct: 218 STNGNNSTTTTTSSAAHPGSFHKGTNDYSSTLAGNEHSAFPGLDVYHDDSVSAG 271


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 395 RFVDRTTLPLSD--NRWQPSSACDNRRQRSSRCDIRWQP 505
           ++   +T P  D  +R + S ACD  RQ+  RCD+   P
Sbjct: 54  KYKKNSTSPNMDVKSRKKVSRACDFCRQKKIRCDMDQSP 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,989
Number of Sequences: 5004
Number of extensions: 65752
Number of successful extensions: 198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)