Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5264
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.14 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.25 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +3

Query: 441 NRHQHVTTAGNGHQDVTSAGNRHQDMTAAGNRHQHGTTAGNRHQHG 578
           NR       GN   D    GNR  D    GNR Q+G    +  Q+G
Sbjct: 463 NRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNR-QNGNKQNDNKQNG 507



 Score = 26.2 bits (55), Expect = 0.33
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +3

Query: 471 NGHQDVTSAGNRHQDMTAAGNRHQHGTTAGNRHQHGTTAGNRHQH 605
           N   D    GNR  D    GNR       GNR Q+G    +  Q+
Sbjct: 463 NRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNR-QNGNKQNDNKQN 506



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +3

Query: 468 GNGHQDVTSAGNRHQDMTAAGNR---HQHGTTAGNRHQH 575
           GN   D    GNR  D    GNR   +Q+     NR+ +
Sbjct: 497 GNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDN 535



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 456 VTTAGNGHQDVTSAGNRHQDMTAAGNRH 539
           V   G   QDVTSA   HQ  +A    H
Sbjct: 8   VVCLGIACQDVTSAAVNHQRKSANNLAH 35


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 16/62 (25%), Positives = 22/62 (35%)
 Frame = +3

Query: 483 DVTSAGNRHQDMTAAGNRHQHGTTAGNRHQHGTTAGNRHQHVTTFDSRSPAVPGWGTSRH 662
           +V S    H      G+ H H T   + H H  T  ++H       S   A+    T  H
Sbjct: 407 NVYSTPGPHHHTMGHGHSHIHATPH-HHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465

Query: 663 QP 668
            P
Sbjct: 466 HP 467


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 319 HLFTH*GNKRIKVDVCIYS 375
           HL  H G+K  K + C YS
Sbjct: 7   HLRNHFGSKPFKCEKCSYS 25


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 14  SFYNFIYELINTTSILKRD 70
           + YN I E+I TT   KRD
Sbjct: 277 AIYNIISEIIETTIQEKRD 295


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 630 PAVPGWGTSRHQPFTDVTIAEN 695
           P + GW   R  P  ++T A+N
Sbjct: 199 PPLVGWKDKRSHPAYNMTFAQN 220


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 373 YIYIHQ-LLYAYYLNV*INEIDKYKIMD 293
           Y+Y+HQ LL  Y LN   N +   K +D
Sbjct: 276 YLYLHQQLLARYELNRLSNGLGPIKDID 303


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 441 CQRLSDRGSVVLSTNLESLLITAIYTYINFYTL-ITLM 331
           C     R S VLS +L SL  + I+T +   TL +TL+
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLV 46


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 441 CQRLSDRGSVVLSTNLESLLITAIYTYINFYTL-ITLM 331
           C     R S VLS +L SL  + I+T +   TL +TL+
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLV 46


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 441 CQRLSDRGSVVLSTNLESLLITAIYTYINFYTL-ITLM 331
           C     R S VLS +L SL  + I+T +   TL +TL+
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLV 46


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 441 CQRLSDRGSVVLSTNLESLLITAIYTYINFYTL-ITLM 331
           C     R S VLS +L SL  + I+T +   TL +TL+
Sbjct: 9   CAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLV 46


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 498 GNRHQDMTAAGNRHQHGTTAGNRHQHGTTAGN 593
           G+     T+ G R  HG  + +  QHG    N
Sbjct: 177 GSTGTTTTSTGTRLLHGILSQHPQQHGLGVQN 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,794
Number of Sequences: 438
Number of extensions: 4814
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)