Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5263
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 32 0.50
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 32 0.50
02_02_0737 - 13529180-13529543,13530661-13531178 31 1.2
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 29 3.5
08_02_1319 + 26117353-26117784 29 3.5
07_03_0091 + 13312904-13313647 29 4.7
10_08_0100 + 14788426-14789097 28 6.2
08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785 28 6.2
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 6.2
06_03_1181 - 28227746-28229115,28229130-28229307 28 8.2
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 28 8.2
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 28 8.2
01_02_0007 + 10132380-10133201 28 8.2
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -2
Query: 683 VRSRHMYGNLLRGKVLFSLLGKEAGHVHFDWNMN---FLFNGVRFWHIYLD 540
V+ H++ N L+ + SL G + GH+H D N +GV F H++L+
Sbjct: 1822 VQFAHLHLNGLQNLIELSLSGLKFGHLHIDQLQNLRELKVSGVEFQHLHLE 1872
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 31.9 bits (69), Expect = 0.50
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +2
Query: 290 PQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS-*RDCQGTSS 466
P N+N + + R + + G P P++ ARSP L R +P ++ + +S
Sbjct: 210 PSNKNMLVADAAA--RSSSLKVAGEGPKPKPKQRARSPPLRR----DVPELFKEAKSSSK 263
Query: 467 RTATLPSRKEGALPSTCPSRQTRPRQGICARTLPR*KESSCSSRSARA 610
R +T P R++ + P PSR + P AR + K SS + RA
Sbjct: 264 RFSTPPPRRKPSSP-PAPSR-SPPHVFATARAHGKPKHKKDSSANGRA 309
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +2
Query: 350 PLPGRK---ENPLPRE-SARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTC 517
PL GR+ +P PR R P PR PS CQ A PSR ALPS
Sbjct: 70 PLQGRRPAESSPQPRPPQVRRPQPPRRHRSTAPSSSSCQFQ----AAAPSRPPSALPSPT 125
Query: 518 PSRQT 532
S T
Sbjct: 126 ASSST 130
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 326 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 451
S R++ P P +K P P + P R CPLP+ R C
Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571
>08_02_1319 + 26117353-26117784
Length = 143
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 416 CQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTL 565
C PL D +GTS L ++ + P TCP++ RP +RT+
Sbjct: 76 CTGKPLEMLLD-RGTSKPDKYLKAKSDSVRPRTCPAKSGRPPGASSSRTV 124
>07_03_0091 + 13312904-13313647
Length = 247
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/69 (27%), Positives = 24/69 (34%)
Frame = +2
Query: 332 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 511
P KA P P K P P S P+ + P PS + + P K P
Sbjct: 166 PSPKADPKPNPKPKPQPEPSPNPKPEPKPEPKPEPSPNPKPNPNPKPEPQPDPKPEPKPQ 225
Query: 512 TCPSRQTRP 538
PS+ P
Sbjct: 226 PEPSQPKLP 234
>10_08_0100 + 14788426-14789097
Length = 223
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 380 PRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTC 517
PR A SP PR C DCQ + R+A P+R + C
Sbjct: 178 PRRPAPSPASPRLPMCSYTCTVDCQTRNVRSA--PTRPSSSTDGGC 221
>08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785
Length = 382
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 581 FLFNGVRFWHIYLDGDGSVDWD 516
F+ NG + H+++DG S+ WD
Sbjct: 132 FISNGTLYHHLHVDGPVSLSWD 153
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 332 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPL 433
PRR A P GR +P P S RSP PR P+
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPM 260
>06_03_1181 - 28227746-28229115,28229130-28229307
Length = 515
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 421 NMSLTQLKRLSRYQFT--YRNPTQSKRRCLTQYMSQSTDPSPSRYMCQNLTPLKRKFMFQ 594
++ TQ + L R Q +NP+Q++ LTQ Q+ P++ + Q L P + + Q
Sbjct: 82 SIKATQAQDLPRTQAPSQVQNPSQAQIPILTQNTPQAQITIPTQNLAQTLIPSQNQIPIQ 141
Query: 595 SKCTCPASLP 624
+ + +P
Sbjct: 142 THISFQPHIP 151
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 403 NPTPLSNMSLTQLKR---LSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPSRYM 552
N LSN L+Q++R L +Y Y + + L QY+ TDPS S ++
Sbjct: 675 NLMSLSNYMLSQMQRMEFLQKYPLVYTSLQLIQPCHLLQYIVHLTDPSRSMFI 727
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 350 PLPGRKENPLPRESARSPTLPRCQTCPLP 436
PLP R+ PLP SA P + PLP
Sbjct: 16 PLPPRRRLPLPSSSASFPRAGHHRRLPLP 44
>01_02_0007 + 10132380-10133201
Length = 273
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/80 (26%), Positives = 32/80 (40%)
Frame = +2
Query: 332 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 511
PR + PLP NP P+ + P+ Q PLP + P + G P+
Sbjct: 54 PRPQPQPLPQPNPNPQPQPLPQPQPQPQPQPQPLPQPQPQPQPLPLPGPQPLPQPGPQPN 113
Query: 512 TCPSRQTRPRQGICARTLPR 571
P+ Q P+ + LP+
Sbjct: 114 --PNPQPLPQPNPNPQPLPQ 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,287,128
Number of Sequences: 37544
Number of extensions: 292458
Number of successful extensions: 1025
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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