Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5263
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    31   0.79 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical...    27   9.8  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +2

Query: 320 SCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 499
           S S PRR+    P ++    PR + RSP+ PR +       R  +    R+ + P R+  
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRR-------RISRSPVRRSRSPPRRQVS 140

Query: 500 ALPSTCPSRQTRPR 541
              S  P RQ R R
Sbjct: 141 RSRSPPPRRQQRSR 154


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 25/106 (23%), Positives = 47/106 (44%)
 Frame = +2

Query: 284 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 463
           G P+ R     S    P R+    P + ++P P+  A+S    R ++ P P+ R    ++
Sbjct: 300 GSPRRRRSPSASKSPPPARRRRS-PSQSKSPAPKR-AKS----RSKSPPAPARRRRSPSA 353

Query: 464 SRTATLPSRKEGALPSTCPSRQTRPRQGICARTLPR*KESSCSSRS 601
           S++     ++  +   + P+R+ R      +   PR + S   SRS
Sbjct: 354 SKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRS 399


>Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical
           protein T07G12.3 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 509 WVRHLLFDWV-GLRYVNWYLDNLFNWVRDMFDN 414
           W+  +  DW+ G   V+ YL N F    +MFDN
Sbjct: 357 WLAWVAHDWIDGAARVDEYLVNYFKKHNNMFDN 389


>AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical
           protein T21D12.7 protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 517 SQSTDPSPSRYMCQNLTPLKRKFMFQSKCTCPASLPS-REKSTLPR 651
           S S D  P +YMCQ    L+          CPA + + RE    PR
Sbjct: 353 SSSRDSCPEQYMCQQAKNLEH-ICCTKPLNCPAGMDALRENGGRPR 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,369,067
Number of Sequences: 27780
Number of extensions: 221731
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)