Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5262
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0795 - 6257985-6258149,6258276-6258380,6259196-6259328,626...    29   2.3  
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566...    29   2.3  
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361...    28   5.4  
06_01_0008 + 141405-142421                                             28   7.1  

>07_01_0795 -
           6257985-6258149,6258276-6258380,6259196-6259328,
           6260225-6260289,6260569-6261642,6262328-6262433,
           6262872-6263044,6263352-6263765
          Length = 744

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 266 WKQSREIIAYLDGSLNSVTV*T 201
           WK + E+I YLD SL+S++V T
Sbjct: 615 WKTASEMIEYLDSSLSSISVGT 636


>03_05_0327 - 23154014-23154942,23155169-23155316,23155606-23156622,
            23156753-23157217,23160258-23161247
          Length = 1182

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 493  LLGSMGDGNQSPLGGLCARLPIRAIKKTELLN 588
            L+G   +GN    GG C  L + A+ K ELL+
Sbjct: 1021 LIGPQAEGNMCDFGGSCLPLWVVALAKNELLD 1052


>01_06_1357 +
           36632992-36633621,36634003-36635136,36635525-36636193,
           36636250-36636343,36636378-36636490
          Length = 879

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 554 GRRAHSPPNGDWFPSPMDPSKSRGRAK-PLPTKNNIRYISHITDKKSEQ 411
           GR     PNG   P   +P+  RGR K P P+    +     T K +++
Sbjct: 319 GRHIRCSPNGAAVPESPEPAPRRGRRKSPSPSPPKAKTTRRRTKKNTQE 367


>06_01_0008 + 141405-142421
          Length = 338

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 550 DEHTAHLMAIGSRRPWTPANPEAEPSRCLP 461
           D H AH   +GS RP  PA+  A PS   P
Sbjct: 250 DPHHAH-PTLGSHRPAAPASASASPSPAPP 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,539
Number of Sequences: 37544
Number of extensions: 307417
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)