Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5259
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    29   0.43 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   9.1  

>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 441 ADVLPTLALARAVAESTTGSETRPTEKIRPETQW 542
           A++ P  A+A AVA +    E  P EK   +T W
Sbjct: 106 AEIAPMAAVAPAVASAAPSEEKAPEEKKEEKTTW 139


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 471 RAVAESTTGSETRPTEKIRPETQW 542
           R VA+   G E +PT+  +P  +W
Sbjct: 35  REVAQDVPGFERKPTKVRKPRVKW 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,043
Number of Sequences: 5004
Number of extensions: 44416
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)