Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5258
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    65   6e-12
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.2  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   1.6  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   2.1  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    26   2.7  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   3.6  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    26   3.6  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    25   4.8  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   6.3  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.4  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   8.4  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 64.9 bits (151), Expect = 6e-12
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
 Frame = +1

Query: 37  PHIMLTLAKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSSKF 213
           P     + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L + F
Sbjct: 3   PPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLETSF 60

Query: 214 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDT 393
             K  GLT ++ W T N L + + + ++ A GL + +  TF+P T  KT  L     +  
Sbjct: 61  NDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQHPL 120

Query: 394 VAVNTNLD 417
           +  + +++
Sbjct: 121 IHTHASVN 128


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 316  VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 420
            V++E    P+  T +G+++T+F  DT+ +   L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +1

Query: 1   EFGTRDKTQTWLPHIMLTLAKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES 180
           E GT  K Q  L      +    N+     YH G    D+  ++E+ +  T+G  + ++S
Sbjct: 301 ELGTSCKNQHILQCTDYAMFGSCNNPQCSLYH-GAVSADVPEQTEAPISKTAGSINPEDS 359

Query: 181 GKVFGSLS 204
           G   GS S
Sbjct: 360 GSEIGSNS 367


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 127 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 276
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 174 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 67
           L GG   G+F++ L  G++  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +2

Query: 125 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 217
           P   L +  P   +  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
 Frame = +1

Query: 241 TEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTG--TKTGKLKTSFTNDTVAVNTNL 414
           T+ W+  N  A DIT  D++   ++    GTF       T+  +L  S +       + L
Sbjct: 115 TDNWSQHNVFAIDITGIDELQQSIRDN-GGTFVNLRSIFTEQYQLSASDSGACAFARSIL 173

Query: 415 DLDLARPSCRRCSSTKLPRVG 477
           D       C  C    +P +G
Sbjct: 174 DWISRYRFCPGCGKRNIPTMG 194


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 16  DKTQTWLPHIMLTLAKKANDVFSKGYHFGVFKLDLKTKSESGVE 147
           DKT++WL     TL K    +      +      LKTK E+ +E
Sbjct: 98  DKTKSWLSSKRNTLNKSKESLQKDEAEYVELANSLKTKVETNIE 141


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 265 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 363
           T+A D++   ++ A   VTLEGT   +TG  TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 151 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 276
           T+G  +   +G V G LS    +    + F EK++ +  LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +1

Query: 115  DLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQD 294
            D +  SESGV+  S  T  Q +  V     +     +Y  T +   +  +    +I I D
Sbjct: 4560 DKQFSSESGVQMFSHFTFEQSNTNVLALADASMKCFNYANTASHHRSNSDIRQLEIIISD 4619

Query: 295  KI 300
             I
Sbjct: 4620 GI 4621


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 166  SNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNT 267
            SNQ   K+  +L+ +   K +   +  K   DNT
Sbjct: 1160 SNQSKDKIIAALAKRNVYKSFAGLYDSKGKNDNT 1193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,908
Number of Sequences: 5004
Number of extensions: 35573
Number of successful extensions: 98
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)