Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5258
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 110 6e-25
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 32 0.20
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 32 0.20
AL022270-2|CAB63433.2| 952|Caenorhabditis elegans Hypothetical ... 29 1.4
AC024813-5|AAK27883.1| 255|Caenorhabditis elegans Hypothetical ... 29 1.9
AC024813-4|AAK27882.1| 297|Caenorhabditis elegans Hypothetical ... 29 1.9
Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical pr... 28 4.3
U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical pr... 27 10.0
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 110 bits (264), Expect = 6e-25
Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Frame = +1
Query: 37 PHIMLTLAKKANDVFSKGYHFGVFKLDLKTKSESG--VEFTSGITSNQESGKVFGSLSSK 210
P L K A D+F+KGY+FG K+D T++ VEF S + N SGK+ G+L K
Sbjct: 3 PPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGGNLDVK 62
Query: 211 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 390
+ + YG+T TEKWNT+N L T I + ++ GLKVTL+ +AP G ++GK+K +
Sbjct: 63 YKIPQYGITLTEKWNTENQLGTVIEVNEQFGRGLKVTLDSLYAPHAGKRSGKVKLDWALP 122
Query: 391 TVAVNTNLDLDLA 429
T V ++ + A
Sbjct: 123 TARVTADVGVTSA 135
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
T08A11.1 protein.
Length = 1872
Score = 32.3 bits (70), Expect = 0.20
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 124 TKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATD 279
T+S G + +S G+ S K+ V +G T EKWN D + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 32.3 bits (70), Expect = 0.20
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 124 TKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATD 279
T+S G + +S G+ S K+ V +G T EKWN D + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094
>AL022270-2|CAB63433.2| 952|Caenorhabditis elegans Hypothetical
protein C26G2.2 protein.
Length = 952
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 226 YGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND-TVAV 402
Y TFT W+T++T+ T QD + + T E T A + + T T + T +V
Sbjct: 460 YPSTFTSSWSTESTVLT-TQQQDTTTSVILETTEATDAASSSLSPDDVSTQLTTEATTSV 518
Query: 403 NTNLDLD 423
+++ D
Sbjct: 519 VSSVPPD 525
>AC024813-5|AAK27883.1| 255|Caenorhabditis elegans Hypothetical
protein Y54F10AL.1b protein.
Length = 255
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 142 VEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDI 282
+E G+ S E+ K+F +S+ ++ + LTF +W + L T I
Sbjct: 184 LEGGGGVASQSETRKIF-LFTSRIFIEAFSLTFVAEWGDRSQLTTII 229
>AC024813-4|AAK27882.1| 297|Caenorhabditis elegans Hypothetical
protein Y54F10AL.1a protein.
Length = 297
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 142 VEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDI 282
+E G+ S E+ K+F +S+ ++ + LTF +W + L T I
Sbjct: 184 LEGGGGVASQSETRKIF-LFTSRIFIEAFSLTFVAEWGDRSQLTTII 229
>Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical
protein F57G4.1 protein.
Length = 838
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 187 VFGSLSSKFAVKDYGLTFTEKWNTDNTLATDI 282
VFG LSS DYG+T K+ TD I
Sbjct: 252 VFGELSSSKKTIDYGITKQWKYRTDGRFELSI 283
>Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical
protein F47B10.1 protein.
Length = 435
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 213 KFGGKAAKNLSAFLVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG--LLCQGQHNM 40
+ GGK + L GG G F++ L G+Q+ F +V A +IG L+ + +
Sbjct: 60 RIGGKDYVVKAQVLAGGRGKGRFSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHR 119
Query: 39 GEPC 28
G+ C
Sbjct: 120 GKKC 123
>U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical
protein T20F5.4 protein.
Length = 333
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 56 WQRRPMMSSARAITLVFSNST*RPRASLVLN-SPAESPPTRKA 181
W ++ + RA +V+ +ST +P L SPA SPP R+A
Sbjct: 237 WNKQKADAMFRA-NVVYVSSTEQPTKPAPLRFSPARSPPVRRA 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,917,855
Number of Sequences: 27780
Number of extensions: 203087
Number of successful extensions: 542
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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