Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5257
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 30 0.16
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 29 0.28
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 29 0.37
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 28 0.64
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 1.5
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe... 26 2.0
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 26 2.6
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 3.4
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 3.4
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c... 25 6.0
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 24 7.9
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 29.9 bits (64), Expect = 0.16
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 171 ARIKRQTXSDNN-RMTRLPSKKCSRKWNAWREPSGRATATSAGALI 305
A K+ T DNN L K KWNAW E G++ +A I
Sbjct: 29 ALFKQATVGDNNTEKPGLLDLKGKFKWNAWEELKGKSKEDAASEYI 74
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 29.1 bits (62), Expect = 0.28
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 147 ARTAF*GSTFAVSRQNDKTDCNQTPHFTQSS 55
AR F +F V+ N DCN TPH +S
Sbjct: 289 ARLNFLSFSFCVNPMNQSLDCNTTPHRRNAS 319
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 28.7 bits (61), Expect = 0.37
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 342 HSCPASSTGGTLESEHLQKWQLLSHWVPARHSTSDCISWTA 220
H P S+ G E H +K + W+ ++ CI+W+A
Sbjct: 266 HPSPLSAHRGFFECHHFKK---TNEWLEEQYGPEKCINWSA 303
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.9 bits (59), Expect = 0.64
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 294 LQKWQLLSHWVPARHSTSDCISWTADASSCCYL 196
L+ W L + P +STS C + +++ SCC+L
Sbjct: 1778 LESWGLFENKAPFVNSTSICTA-VSESRSCCHL 1809
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 26.6 bits (56), Expect = 1.5
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +3
Query: 138 QSWHRRPMCXRARIKR---QTXSDNNRMTRLPSKKCSRK--WNAWREPSGR 275
QSWH RP A+I M L S K S K N WR P+ R
Sbjct: 1347 QSWHHRPTYRIAKIMEHLGNVQQAKEEMETLFSYKTSGKSLLNIWRTPNER 1397
>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
phosphopantetheinyl transferase Lys7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 67 EMRCLIAICFIVLARHCESGALKCSP 144
+M +A+ I++ RH S AL+CSP
Sbjct: 43 DMDAKMALASILIKRHLVSTALECSP 68
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 180 KRQTXSDNNRMTRLPSKKCSRKWNAWREPSGRATATS 290
K Q ++ + R K+C +W W +PS + T S
Sbjct: 26 KNQWARISSLLVRKTPKQCKARWYEWIDPSIKKTEWS 62
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 3.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 90 LFYRFGATLRKWS 128
+FYRFG ++R WS
Sbjct: 528 IFYRFGKSIRAWS 540
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.4 bits (53), Expect = 3.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 233 MQSEVECLAGTQWES 277
+Q+ VEC+AGT W S
Sbjct: 606 VQALVECVAGTDWSS 620
>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 24.6 bits (51), Expect = 6.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 246 TSDCISWTADASSCCYLTRFV 184
T+ CIS +S CC LTR +
Sbjct: 39 TARCISVLLASSVCCILTRLI 59
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 198 DNNRMTRLPSKKCSRKWNAWREPSGRATATSAG 296
D R+ +PS R W P GR T + G
Sbjct: 464 DTLRLVHVPSFSVFRNWPTSATPLGRVTCLAFG 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,322
Number of Sequences: 5004
Number of extensions: 35452
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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