Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5257
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0068 + 6536756-6537253 33 0.087
08_01_0970 - 9778183-9778488,9780052-9780567 29 1.1
05_05_0220 + 23380290-23381581,23381997-23383458 29 1.9
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 3.3
03_01_0340 - 2680860-2682197 28 3.3
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 27 4.3
07_03_0898 - 22403337-22404950 27 4.3
07_03_0896 + 22373348-22374946 27 4.3
06_03_1244 - 28643570-28643946,28644041-28644200,28644345-28644752 27 4.3
06_03_1243 + 28638140-28638508,28638959-28639118,28639213-28639589 27 4.3
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 27 4.3
11_06_0422 + 23338125-23339567 27 5.7
06_01_0603 - 4350124-4350590,4350995-4353608 27 5.7
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059... 27 5.7
09_04_0183 + 15389691-15390197,15391259-15391582 27 7.6
06_03_1245 + 28652216-28652524,28652564-28652761,28652880-286529... 27 7.6
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420... 27 7.6
>02_02_0068 + 6536756-6537253
Length = 165
Score = 33.1 bits (72), Expect = 0.087
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 138 QSW--HRRPMCXRARIKRQTXSDNNRMT--RLPSKKCSRKWNAWREPSGRATATSA 293
+SW RR C R R R+ SD+ + RL +++C R+W E G A +A
Sbjct: 78 RSWVFRRRARCCRRRPARRGPSDSVLVANRRLEARRCCRRWRRGEEEGGAAKRRTA 133
>08_01_0970 - 9778183-9778488,9780052-9780567
Length = 273
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = -3
Query: 285 WQLLSHWV----PARHSTSDCISWTADASSCCY 199
+Q ++W+ P+ +S DC SW+ D S CY
Sbjct: 186 YQNETYWIKPPTPSNYSDPDCNSWSNDQSELCY 218
>05_05_0220 + 23380290-23381581,23381997-23383458
Length = 917
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 404 IPCERRVPG*QRTGSVKYNLITAVLPQALGGLLNQSTCRSGSCSPTGFPPG 252
IP + G ++ V +NL T LP++L GL S+ +G + G PG
Sbjct: 202 IPADVGEAGLLKSLDVGHNLFTGELPESLRGLTGLSSLGAGGNALAGELPG 252
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 117 RKWSPKMQSWHRRPMCXRARIKRQTXSDNNR 209
R+ S K W+R R R+K T SD R
Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607
>03_01_0340 - 2680860-2682197
Length = 445
Score = 27.9 bits (59), Expect = 3.3
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 96 YRFGATLRKWSP-KMQSWHRR---PMCXRAR-IKRQTXSDNNRMTRLPSKKCSRKWNAWR 260
++ GA LR P K W RR P R R + DN ++ R PS + S +W R
Sbjct: 137 WKGGAWLRSILPRKGMRWSRRKEPPRPPRPRPVDPDGAGDNAQVERKPSFRRSCEWMVCR 196
Query: 261 EP 266
EP
Sbjct: 197 EP 198
>07_03_1704 +
28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 281 SCSPTGFPPGIPLPTAFL 228
SC P G PP +PLP A L
Sbjct: 909 SCYPRGVPPMLPLPMAAL 926
>07_03_0898 - 22403337-22404950
Length = 537
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +1
Query: 112 HCESGA-LKCSPGTEGPCA 165
HC +GA CSPG PCA
Sbjct: 69 HCTAGADPSCSPGAASPCA 87
>07_03_0896 + 22373348-22374946
Length = 532
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +1
Query: 112 HCESGA-LKCSPGTEGPCA 165
HC +GA CSPG PCA
Sbjct: 70 HCTAGADPSCSPGAASPCA 88
>06_03_1244 - 28643570-28643946,28644041-28644200,28644345-28644752
Length = 314
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 261 EPSGRATATSAGALIQESPQCLRQDSCDQII 353
+P G T +A A + PQC + SC I+
Sbjct: 96 KPEGFTTVIAAKAAVDSDPQCRNRVSCADIL 126
>06_03_1243 + 28638140-28638508,28638959-28639118,28639213-28639589
Length = 301
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 261 EPSGRATATSAGALIQESPQCLRQDSCDQII 353
+P G T +A A + PQC + SC I+
Sbjct: 83 KPEGFTTVIAAKAAVDSDPQCRNRVSCADIL 113
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +3
Query: 180 KRQTXSDNNRMTRLPSKKCSRKWNAWREPSGRATATSAGALIQ 308
K Q ++ + R +K+C +W W +PS + + L+Q
Sbjct: 27 KNQWARISSLLVRKSAKQCKARWYEWLDPSIKKLCSPHAILLQ 69
>11_06_0422 + 23338125-23339567
Length = 480
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 389 RVPG*QRTGSVKYNLITAVLPQALGGLLNQSTC--RSGSCSPTGFPPG 252
++P R +V +N +T VLP+A+ N+S G C G G
Sbjct: 203 KLPATLRLFNVSHNRLTGVLPEAVAARFNESAFAGNPGLCGAPGSGAG 250
>06_01_0603 - 4350124-4350590,4350995-4353608
Length = 1026
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -1
Query: 371 RTGSVKYNLITAVLPQALGGLLNQSTCR-SGSCSPTGFPPGIPLPTAFLGRQTRH 210
R + N + +P+ G L N S G+ G+ PGI A R+TRH
Sbjct: 552 RDANFSCNNFSGAVPRGAGVLANLSAAAFRGNPGLCGYVPGIAACGAATARRTRH 606
>03_05_1024 +
29802831-29804208,29804710-29804759,29805569-29805954,
29807753-29807813,29807921-29807941
Length = 631
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 86 AIKHLISLNPQSQHCLARERSTSPPRAE 3
A HL +NPQ Q STSPP ++
Sbjct: 231 AAMHLFLMNPQQQQQQQSRSSTSPPPSD 258
>09_04_0183 + 15389691-15390197,15391259-15391582
Length = 276
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 264 VPARHSTSDCISWTADASSCCY 199
VP S DC +W D + CY
Sbjct: 192 VPTNSSDPDCNTWVDDGTQLCY 213
>06_03_1245 +
28652216-28652524,28652564-28652761,28652880-28652981,
28653663-28653822,28654057-28654439
Length = 383
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 261 EPSGRATATSAGALIQESPQCLRQDSCDQII 353
+P G T +A A + PQC + SC I+
Sbjct: 129 KPEGFTTVLNAKAAVDSDPQCRYKVSCADIL 159
>03_05_0469 +
24640925-24641081,24641292-24641644,24641870-24642043,
24642382-24642506,24643011-24643059,24643741-24643899,
24644037-24644219
Length = 399
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = -1
Query: 335 VLPQALGGLLNQSTCRSGSC--SPTGFPPGIPLP 240
VLP A + S G SPT PG PLP
Sbjct: 114 VLPPAAASIYKTSASEGGGAQLSPTSMNPGSPLP 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,616
Number of Sequences: 37544
Number of extensions: 297118
Number of successful extensions: 850
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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