Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5257
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   0.58 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   9.4  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 374 QRTGSVKYNLITAVLPQA 321
           ++ G ++YNL+  V+P+A
Sbjct: 84  KKNGKIRYNLLKKVIPEA 101


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 189 TXSDNNRMTRLPSKKCSRK 245
           T   NN +TR+PS + +++
Sbjct: 293 TIQHNNCLTRIPSTRINKQ 311


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 255 WREPSGRATATSAGALIQESPQ 320
           W E     ++++ G  IQE PQ
Sbjct: 594 WLEKREHRSSSTKGITIQEPPQ 615


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 253 PGGNPVGEQLP 285
           PG NPV ++LP
Sbjct: 369 PGENPVTQRLP 379


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -1

Query: 149 VPGLHFRAPLSQCRAKTIKQIAIKHLISLNPQSQHCLARERSTSPPRAE 3
           V  +HFR+P +   A  ++++ I  L  L    ++    +RS    R +
Sbjct: 324 VLNVHFRSPQTHVMAPWVRRVFIHVLPRLLVMRRYNTPSKRSDYDSRPQ 372


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 139 CILGLHFRS 113
           C+L +HFRS
Sbjct: 332 CVLNVHFRS 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,732
Number of Sequences: 438
Number of extensions: 2660
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)