Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5256
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0566 - 15521494-15521511,15521550-15521747,15521856-155220... 48 5e-06
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342... 47 8e-06
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 46 1e-05
11_01_0075 + 591537-591618,592410-592648,592840-593037,593129-59... 46 2e-05
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 34 0.079
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 34 0.079
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 33 0.14
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 32 0.24
10_08_0965 + 21915842-21916906 29 1.7
03_06_0485 + 34242121-34243188 29 1.7
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 29 1.7
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 5.2
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 27 6.8
06_01_0807 - 6069998-6071326 27 6.8
04_03_0043 + 10076575-10076922 27 6.8
01_05_0795 + 25287449-25287967,25288078-25288138,25288640-252887... 27 6.8
07_01_0533 + 3942813-3943164,3943244-3943458 27 9.0
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 27 9.0
>05_03_0566 -
15521494-15521511,15521550-15521747,15521856-15522037,
15522643-15522721
Length = 158
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +3
Query: 21 CEFCEQLVKHLRDVLVANTTELEFYKVLQGLCKQTGKFKDECLHLAEQYYPVIYNFLVSD 200
C+ CE+ L N T++E L C + FK EC L + YY ++ V+
Sbjct: 47 CQICEEFATEALFYLNENETQVEIIATLHQACSKFPSFKLECTKLVD-YYVSLFFTKVTS 105
Query: 201 LKPAETCKMIGICGNLT 251
L P E C+ + +C +T
Sbjct: 106 LSPEEFCESVSLCHKVT 122
>01_01_0462 +
3422352-3422439,3423057-3423241,3423333-3423530,
3423617-3423676,3424022-3424171
Length = 226
Score = 47.2 bits (107), Expect = 8e-06
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 21 CEFCEQLVKHLRDVLVANTTELEFYKVLQGLCKQTGKFKDECLHLAEQYYPVIYNFLVSD 200
C+ CEQ L N T+ E +L C G K +C+ L + Y P+ + VS
Sbjct: 51 CQLCEQYSTEALFYLQQNETQTEILSILHHACANVGPLKQQCITLVDYYIPLFF-LEVSM 109
Query: 201 LKPAETCKMIGIC 239
+ P + C+ + +C
Sbjct: 110 VTPEKFCESVHLC 122
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +3
Query: 21 CEFCEQLVKHLRDVLVANTTELEFYKVLQGLCKQTGKFKDECLHLAEQYYPVIYNFLVSD 200
C CE + + L + + +L C QT F+ +CL + Y +++ +++
Sbjct: 67 CSACENITSEAVNFLSEKQIQDKIMTILHDTCSQTFSFEQKCLETMDSYATLVF-AKIAE 125
Query: 201 LKPAETCKMIGICGNL 248
+KP E CK G+C ++
Sbjct: 126 IKPDEFCKQYGLCRDM 141
>11_01_0075 +
591537-591618,592410-592648,592840-593037,593129-593188,
593313-593456,594655-594819,595611-595709,596057-596125,
596216-596312,596922-597013,597085-597255,598053-598184,
598479-598559,599131-599247,599344-599433
Length = 611
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +3
Query: 21 CEFCEQLVKHLRDVLVANTTELEFYKVLQGLCKQTGKFKDECLHLAEQYYPVIYNFLVSD 200
C CE + + L + + +L C QT F+ +CL + Y +++ +++
Sbjct: 67 CSACENITSEAVNFLSEKQIQDKIRTILHDTCSQTFSFEQKCLETMDSYATLVF-AKIAE 125
Query: 201 LKPAETCKMIGICGNL 248
+KPA CK G+C ++
Sbjct: 126 IKPAAFCKQYGLCRDM 141
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 33.9 bits (74), Expect = 0.079
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 123 TGKFKDECLHLAEQYYPVIYNFLVSDLKPAETCKMIGIC 239
TG EC + QY I + L+++ +P++ C +G+C
Sbjct: 313 TGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLC 351
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 33.9 bits (74), Expect = 0.079
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 123 TGKFKDECLHLAEQYYPVIYNFLVSDLKPAETCKMIGIC 239
TG EC + QY I + L ++ KPA+ C +G+C
Sbjct: 323 TGVVSQECKAVVSQYGQQILDQLRAETKPAKVCSSVGLC 361
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 126 GKFKDECLHLAEQYYPVIYNFLVSDLKPAETCKMIGIC 239
G EC + +Y +I N L++ P + C +G+C
Sbjct: 306 GIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLC 343
>01_06_1670 - 39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 87 EFYKVLQGLCKQTGKFKDECLHLAEQYYPVIYNFLVSDLKPAETCKMIGICGNLTSA 257
+F VL +CK+ G+ D + + +++PV N ++ L P GI + +SA
Sbjct: 898 DFLSVLDQVCKEVGRINDRTIASSVRHFPVPVNPMMPQLFPRIHALRAGISDDESSA 954
>10_08_0965 + 21915842-21916906
Length = 354
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 249 TSAPISPLVARELVVKVQPKLIGAEESKIARVPLAKQMEPASAAVSVLPLERMFVAAPQS 428
+SAP+ P+V R +G + A A +ME + + + L A P+S
Sbjct: 70 SSAPVLPVVVRP----ASSAAVGEQVVGKASAERAAEMERLISRLPLFTLASSLAALPKS 125
Query: 429 KAACAFCQ 452
CA CQ
Sbjct: 126 SRDCAVCQ 133
>03_06_0485 + 34242121-34243188
Length = 355
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = -2
Query: 472 CK*CRKYW------QNAQAALLCGAATNMRSSGSTDTAALAGSICFANGTRAIFDSSA 317
CK CR+YW +N C +SS S+ + + AGS GT + S+A
Sbjct: 86 CKTCRRYWTRGGALRNVPVGGGCRRNKRTKSSKSSSSTSAAGSASATGGTSSSTSSTA 143
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 141 ECLHLAEQYYPVIYNFLVSDLKPAETCKMIGIC 239
EC + Y +I L++ P + C IG+C
Sbjct: 310 ECKQVVRDYGDMILEMLIAQASPMKLCSQIGLC 342
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 432 PCSAAPLRTCAPAAVRIPPR 373
P +AAP R APA R PPR
Sbjct: 197 PATAAPQRMAAPAPPRSPPR 216
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 261 ISPLVARELVVKVQPKLIGAEESKIARVPLAKQMEPASAAV-SVLPLERMFVAAPQ 425
+SP A+EL+ + + + +AR+P A PA V V P + M + PQ
Sbjct: 208 VSPEKAQELMFLASRGSLPSAPTTVARMPEAHVFPPAKVTVPEVSPTKPMMLQKPQ 263
>06_01_0807 - 6069998-6071326
Length = 442
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 19 RANFANSW-SNICETFSSRILLNSNSIKFFKASASKPENSRTNVYT*PNSTIRS 177
R ++ W S I TFSSRI S S + A+ + + + T T P ST R+
Sbjct: 331 RIGRSDRWPSFIARTFSSRIPFWSASRRVLDAAEAGADAAATTTTTTPTSTART 384
>04_03_0043 + 10076575-10076922
Length = 115
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 2 CDRRCSVRILRTAGQTSARRSRREYY*TRIL*SSSRPLQANRKIQGRMSTLSRTVLSG 175
CD C R + T R+ R+ ++ R +RP +QGR T S SG
Sbjct: 25 CDTACGKRDGYSGELTGERKQRKRWWRERRASGGARPTFIEAALQGRRGTESAHRQSG 82
>01_05_0795 +
25287449-25287967,25288078-25288138,25288640-25288734,
25288827-25288939,25289480-25289648,25289777-25289816,
25289906-25289970,25290150-25290263,25290398-25290462,
25290572-25290725,25290798-25290914,25292489-25292545
Length = 522
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 123 TGKFKDECLHLAEQYYPVIYNFLVSDLKPAETCKMIGIC 239
TG +EC + ++ + L PA+ C IG+C
Sbjct: 367 TGVANEECKQVVARHGHEMLELLQDKTPPAQVCSKIGLC 405
>07_01_0533 + 3942813-3943164,3943244-3943458
Length = 188
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +3
Query: 204 KPAETCKMIGICGNLTSAPISPLVARELVVKVQPKLIGAEESKIARVPLAKQMEPASAAV 383
KPA C ++G + I+ A EL K A + VP+ PA+ A
Sbjct: 75 KPACLCAVLGGGASSLGVTINNTRALELPAACNVKTPPASQCSTVGVPMPSPATPATPAA 134
Query: 384 SVLPLE 401
+P E
Sbjct: 135 PAVPSE 140
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +2
Query: 17 SVRILRTAGQTSARRSRREYY*TRIL*SSSRPLQANRKIQGRMSTLSRTVLSG--HLQLP 190
+ +IL Q S+R Y RI R + I +SR + S +L+LP
Sbjct: 230 AAKILEPRPQVSSREKICSYSPARI---PLRISETRENIPASQRAVSRQLQSSRTNLELP 286
Query: 191 SVRFETG*NVQNDWD 235
VRF G + W+
Sbjct: 287 DVRFSRGQQMNRSWN 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,614,995
Number of Sequences: 37544
Number of extensions: 238657
Number of successful extensions: 1029
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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