Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5256
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.47 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 70  RILLNSNSIKFFKASASKPENSRTNV 147
           RI+L +N+I  F   ASK ENS   V
Sbjct: 263 RIVLGTNTILTFMTLASKVENSLPKV 288


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 70   RILLNSNSIKFFKASASKPE 129
            ++LL S+ IKF   + S+PE
Sbjct: 1509 KVLLGSDKIKFVPGTTSQPE 1528


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +3

Query: 150 HLAEQYYPVIYNFLVSDLKPAETCKMIGICGNLTSAPISP 269
           +L+    P++YN + +  + A    +   CG  +S    P
Sbjct: 338 YLSTTVNPLLYNIMSNKFREAFKLMLPNCCGKWSSQKSEP 377


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 403 RSSGSTDTAALAGSICFANGTRAIFDSSAPI 311
           RSS ++ T +     CF  G R   +S  P+
Sbjct: 284 RSSSASTTCSGHTVRCFTGGPRKSHESQCPM 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,377
Number of Sequences: 438
Number of extensions: 2151
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)