Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5255
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    27   2.7  
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    27   3.5  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   8.2  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 421 LQKATHIYNII*NWSKDPSFDFTTYYTMNNV 329
           + K THI N     S D SF    Y+T NN+
Sbjct: 88  INKITHIINFAAESSVDRSFIDPLYFTKNNI 118


>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 633 SSNGQDINWSRLSPHLKPS 577
           SSNG  +N +RLSP  KPS
Sbjct: 74  SSNGTFVNETRLSPENKPS 92


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 382 WSKDPSFDFTTYYTMNNVN 326
           W+  P FD  TY  M++VN
Sbjct: 494 WANKPDFDSETYMGMSSVN 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,636
Number of Sequences: 5004
Number of extensions: 59379
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)