Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5254
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    26   0.27 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.5  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   3.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   3.3  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   5.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   5.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 517 HNVSLWHRRSFVHIK*RLIQRQQQNNETK 431
           H ++ W RR F+H+  RL+  ++ N  +K
Sbjct: 335 HVMAPWVRRVFIHVLPRLLVMRRYNTPSK 363


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 396 AHAKHNARAREVRRDYENFEITIKHF 319
           AH   N+RA     DY     T+K+F
Sbjct: 127 AHGTGNSRANTYNFDYPQVPYTVKNF 152


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 337 NNNKTFLDPSERRASETRFVIVVFGQILI 251
           N+N T L P + R +E   V +VF  +L+
Sbjct: 20  NSNYTELLPIDMRFNEGHIVSIVFYSVLM 48


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 333 LFQNFHNHVEPLWR 374
           LF N HNH++ +++
Sbjct: 51  LFDNVHNHIQNIFK 64


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 333 LFQNFHNHVEPLWR 374
           LF N HNH++ +++
Sbjct: 34  LFDNVHNHIQNIFK 47


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 102 TDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 10
           TDR +R+K     V C     A + + + DP
Sbjct: 74  TDRVIRAKLGKVGVHCMKTTQAVVVSLYEDP 104


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 209 RVTRSYSSLRVVLFN*NLTEDYD 277
           RVTR YSS   VL + + T+ +D
Sbjct: 241 RVTRCYSSDSAVLSDEDQTKGWD 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,221
Number of Sequences: 438
Number of extensions: 2262
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)