Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5253
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0655 + 5646567-5646650,5646675-5647697,5648227-5648382,564...    29   3.1  
03_02_0314 + 7398247-7400877                                           28   7.1  

>08_01_0655 +
           5646567-5646650,5646675-5647697,5648227-5648382,
           5648499-5648529,5648636-5648808
          Length = 488

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 168 EACIPCYITHTKVFTKHFGSIDLLCSA 248
           E  +P YI    V  K FGS+D+LC A
Sbjct: 462 EVAVPSYIITVFVRWKAFGSLDVLCGA 488


>03_02_0314 + 7398247-7400877
          Length = 876

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 264 KIVETKPNKEGQWSRNVL*KLLC-ALYSTEYTLHTC 160
           ++ E +P+KE +W+ N    +L  +L+STE+ L  C
Sbjct: 374 RLSELRPSKEHEWASNSGFAILVGSLWSTEFNLFFC 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,665,012
Number of Sequences: 37544
Number of extensions: 349526
Number of successful extensions: 719
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)