Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5253
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39472-4|AAK31389.2|  319|Caenorhabditis elegans Helix loop heli...    30   2.1  
U39472-3|AAN39683.1|  320|Caenorhabditis elegans Helix loop heli...    30   2.1  
U39472-2|AAN39684.1|  324|Caenorhabditis elegans Helix loop heli...    30   2.1  
M59940-2|AAA16290.1|  320|Caenorhabditis elegans CeMyoD, alterna...    30   2.1  
M59940-1|AAA16289.1|  324|Caenorhabditis elegans CeMyoD protein.       30   2.1  
Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>U39472-4|AAK31389.2|  319|Caenorhabditis elegans Helix loop helix
           protein 1, isoformc protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 525 NNPSRLLE*VGKKTKIGQLQTHYQSNQQIS 436
           NN  R+L+  GK TKI +   H Q  QQI+
Sbjct: 204 NNLERMLQQAGKMTKIMEQNQHLQMTQQIN 233


>U39472-3|AAN39683.1|  320|Caenorhabditis elegans Helix loop helix
           protein 1, isoforma protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 525 NNPSRLLE*VGKKTKIGQLQTHYQSNQQIS 436
           NN  R+L+  GK TKI +   H Q  QQI+
Sbjct: 200 NNLERMLQQAGKMTKIMEQNQHLQMTQQIN 229


>U39472-2|AAN39684.1|  324|Caenorhabditis elegans Helix loop helix
           protein 1, isoformb protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 525 NNPSRLLE*VGKKTKIGQLQTHYQSNQQIS 436
           NN  R+L+  GK TKI +   H Q  QQI+
Sbjct: 204 NNLERMLQQAGKMTKIMEQNQHLQMTQQIN 233


>M59940-2|AAA16290.1|  320|Caenorhabditis elegans CeMyoD,
           alternatively spliced productprotein.
          Length = 320

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 525 NNPSRLLE*VGKKTKIGQLQTHYQSNQQIS 436
           NN  R+L+  GK TKI +   H Q  QQI+
Sbjct: 200 NNLERMLQQAGKMTKIMEQNQHLQMTQQIN 229


>M59940-1|AAA16289.1|  324|Caenorhabditis elegans CeMyoD protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 525 NNPSRLLE*VGKKTKIGQLQTHYQSNQQIS 436
           NN  R+L+  GK TKI +   H Q  QQI+
Sbjct: 204 NNLERMLQQAGKMTKIMEQNQHLQMTQQIN 233


>Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical
           protein K08F8.4 protein.
          Length = 457

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 184 HGIHASHLFSRPHKAY-ACYEILFPVLSREN 95
           H ++ SH+ SRP K +  CYE+L      E+
Sbjct: 53  HDVNLSHIESRPSKTHEGCYEVLVEFAEAED 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,532,815
Number of Sequences: 27780
Number of extensions: 325859
Number of successful extensions: 964
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)