Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5252
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.59 
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    28   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.0  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   1.4  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   2.4  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    27   2.4  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    27   2.4  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    26   5.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   7.3  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 450 SSRRYRGRVSRLYTEQAPSLPPQQF 376
           + R  RG+V RLYTE+A SL  ++F
Sbjct: 354 AGRTMRGKVFRLYTEKAYSLMKEEF 378


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 478 YLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEK 576
           Y SPT +    P    ++S  P+ VP+P ++ K
Sbjct: 193 YASPTSINEPLPDQQLSSSTKPIKVPKPVSLRK 225


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 484 SPTPLKRKFPLPSRNTSNTPV-YVPEPYTVEKKVPYEVKVHVDKPYEV 624
           +P+P + + PLPS  + N P  Y   P T    +P    +  D+P +V
Sbjct: 499 APSPKEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKV 546


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 180 SLHRYLRNYVLHKIL--CHRCPFCLVSSLRLPSVCLSPPW 67
           SL     N V H +L  C +     +SS ++P VC+SP W
Sbjct: 194 SLQMTEENPVSHAVLYDCSQETLKKISSAQVPIVCVSPKW 233


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +1

Query: 484 SPTPLKRKFPLPSRNTSNTPVYVPEPYTVE--KKVPYEVKVHV----DKPYEVKVKVP 639
           SP P    FP   R T   P Y P+  T    K+VP  +  HV       Y+ KV +P
Sbjct: 211 SPYPSDNGFPGHRRQTHFAPYYYPQRATSPSLKQVPTYLGTHVLQQDQSTYDQKVLMP 268


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 521 DGKGNFLFNGVGLRYGHFHLIGYFLLDGIGDV 426
           DG  +FL N  GLRYG         +D  G++
Sbjct: 110 DGTASFLINPYGLRYGEITASSLIKVDEDGNI 141


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 475 PYLSPTPLKRKFPLPSRNTSNT 540
           P++SP+P+  K  +PS N  N+
Sbjct: 212 PFVSPSPISMKMDMPSLNDRNS 233


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 529 TSNTPVYVPEPYTVEKKVPYEVKVHVDKPYEVKVKVPTP 645
           T+  P+  P PYT E +  Y   +H   P   +   P P
Sbjct: 71  TNFYPLTAPPPYTAEPEARYNSTIHNPMPPMSQAYRPPP 109


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 93  PSVCLSPPWQRQPRPTMPPK*PCTS 19
           P   L PP    PRP++PP  P ++
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASA 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,825
Number of Sequences: 5004
Number of extensions: 39737
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)