Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5252
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0275 - 21469391-21470650 32 0.46
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 31 0.61
04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347 30 1.9
04_03_0904 + 20717005-20718087 29 2.5
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514... 29 2.5
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128... 29 4.3
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 29 4.3
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 29 4.3
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 29 4.3
05_03_0039 - 7621613-7622695 28 5.7
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708... 28 7.5
03_05_0576 + 25765137-25766420 28 7.5
01_02_0007 + 10132380-10133201 28 7.5
07_03_0305 - 16475127-16476017,16476058-16478067 27 9.9
05_03_0040 - 7646525-7647775 27 9.9
>02_04_0275 - 21469391-21470650
Length = 419
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +1
Query: 418 SRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLP---SRNTSNTPVYVPEP 561
+R+T+P+ R +P R + +L + +KR+ P P S ++ ++ + PEP
Sbjct: 183 ARSTAPMAPRVNFPQRTRTQFLPSSGVKRRMPSPPQVSASSESSDGFPPEP 233
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 397 RCLFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVY-VPEPYTVE 573
+CL + + P+P R +P + P PTP+ +P P+ TP Y +P P
Sbjct: 37 KCLMCVCDVDPHPLPPSRHHPPPPEEPEPEPTPVNHHYPPPT-----TPAYSLPPPAQPY 91
Query: 574 KKVPY 588
+ PY
Sbjct: 92 GQYPY 96
>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
Length = 137
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +3
Query: 42 ASLAVVAFAKEEKGTPKAVEEKKQDKR 122
ASL V AKEEK K EEKK DK+
Sbjct: 65 ASLLSVGPAKEEKKEEKKPEEKKDDKK 91
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +1
Query: 430 SPIPSRRKYPMR*KC-PYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHV 606
+P P+ + P K P +P P + P P+ P Y P+P PY
Sbjct: 237 NPPPTYKPAPPTYKPQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKP 296
Query: 607 DKPYEVKVK-VPTPYP 651
+ P K + PTP P
Sbjct: 297 NPPPTYKPQPKPTPTP 312
>01_01_0672 +
5147916-5147976,5148087-5148166,5148329-5148973,
5149111-5149341
Length = 338
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 475 PYLSPTPLKRKFPLPSRNTSNTPVYVPEPYT 567
P L P PL R P P R T+ P P P T
Sbjct: 133 PLLPPPPLVRNEPQPGRYTAGLPPPPPPPVT 163
>11_01_0154 +
1281434-1281725,1281923-1281987,1282112-1282175,
1282303-1282449,1282583-1282677,1284358-1284465
Length = 256
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 108 SSLRLPSVCLSPPWQRQPRPTMPPK*PCTS 19
+++ PS+ S P R+P +PP PC+S
Sbjct: 3 AAVATPSLLFSSPTPRRPSSCLPPPPPCSS 32
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 26 HGYFGGIVGRGCL--CQGGERHTEGSRREETRQKG 124
HGY GG GRG GG + E + R E R +G
Sbjct: 335 HGYTGGADGRGQYRGSDGGRKDGEATPRREIRVRG 369
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 399 PSLPPQQF*CARGVHDDRGGSRLRWQL 319
P LPP+ C VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 11 DHNE-VHGYFGGIVGRGCLCQGG 76
+H++ + GYF I+G CLC GG
Sbjct: 251 EHSKCMDGYFAPILGYNCLCDGG 273
>05_03_0039 - 7621613-7622695
Length = 360
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/76 (30%), Positives = 26/76 (34%)
Frame = +1
Query: 424 NTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVH 603
N P P + P PY P P + P P + P PEP E K PY
Sbjct: 105 NPEPKPEPKPEPKPEPKPYPEPKPKPKPEPKPEPKPEHKPEPKPEP---EPK-PYPKPKP 160
Query: 604 VDKPYEVKVKVPTPYP 651
KP P P P
Sbjct: 161 EPKPGPKPEPKPEPKP 176
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/73 (24%), Positives = 25/73 (34%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDK 612
P P + +P P+ P P + P P P P+P + PY K
Sbjct: 212 PKPEPKLHPKPEPKPHPEPEPKLKPEPKPEPKPEPEPKPEPKPEPKPEPKPYPKPKPEPK 271
Query: 613 PYEVKVKVPTPYP 651
P +P P P
Sbjct: 272 PVPKPKPIPHPGP 284
>06_03_1097 -
27570037-27570262,27570575-27570730,27570763-27570881,
27572154-27572236,27574991-27575041,27575218-27575674,
27576139-27576228,27576672-27576701
Length = 403
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 138 LCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTM 43
L HR P L S R + S WQ+QPR M
Sbjct: 301 LVHRLPQALRFSNRFSCILSSARWQQQPRDGM 332
>03_05_0576 + 25765137-25766420
Length = 427
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 90 SVCLSPPWQRQPRPTMPP 37
+V +SPP Q +PRP +PP
Sbjct: 98 AVSVSPPTQPRPRPELPP 115
>01_02_0007 + 10132380-10133201
Length = 273
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +1
Query: 487 PTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDKPYEVKVKVPTPYP 651
P P + PLP N + P +P+P + P + +P + + P P P
Sbjct: 52 PNPRPQPQPLPQPNPNPQPQPLPQPQPQPQPQPQPLPQPQPQPQPLPLPGPQPLP 106
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 78 SPPWQRQPRPTMPPK*PC 25
SPP Q P P +PP PC
Sbjct: 26 SPPPQTAPAPALPPSNPC 43
>05_03_0040 - 7646525-7647775
Length = 416
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPY-EVKVHVD 609
P P + P PY P P + P P P P+P+ K P E K H +
Sbjct: 124 PKPEPKPEPKPEPKPYPEPKPEPKPEPKPEPKPEPKPKPEPKPHPEPKPDPKPEPKPHPE 183
Query: 610 -KPYEVKVKVPTPYP 651
+P P P+P
Sbjct: 184 PEPKPEPKPEPKPHP 198
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/73 (28%), Positives = 23/73 (31%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDK 612
P P + YP P P P + P P P PEP K P K
Sbjct: 324 PKPEPKPYPE----PKPDPKPEPKPHPEPKPEPKPQPEPKPEPKPEPKPEPKPEPKPEPK 379
Query: 613 PYEVKVKVPTPYP 651
PY P P P
Sbjct: 380 PYPEPKPEPKPKP 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,306,133
Number of Sequences: 37544
Number of extensions: 299265
Number of successful extensions: 1200
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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