Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5252
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 36 0.019
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 30 1.3
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 30 1.7
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 29 2.9
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 29 2.9
Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 28 6.7
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 6.7
Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical p... 27 8.9
Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical p... 27 8.9
Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical p... 27 8.9
Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical p... 27 8.9
U80437-4|AAK68244.1| 90|Caenorhabditis elegans Neurabin protei... 27 8.9
U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protei... 27 8.9
U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protei... 27 8.9
U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protei... 27 8.9
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 475 PYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDKPYEVKVKVPTPYP 651
P+ SP P + P P P + P+P+ P + H KP+ + P P P
Sbjct: 30 PFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMP 88
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/74 (27%), Positives = 29/74 (39%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDK 612
P P PM P P P + P P P+ +P+P K +P + H K
Sbjct: 168 PNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPK 227
Query: 613 PYEVKVKVPTPYPV 654
P+ + P P P+
Sbjct: 228 PFPKPMLFPKPMPI 241
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDK 612
P+P + P P L P P+ P+P + P P P+ K +P H K
Sbjct: 68 PMPKHKPKPF--PKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPKPMP----KHKPK 121
Query: 613 PYEVKVKVPTPYPV 654
P+ + P P P+
Sbjct: 122 PFPKPMLFPKPMPI 135
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSN----TPVYVPEPYTVEKKVPYEVKV 600
PIP +P P L P P+ P+P + P+ P+P K P +
Sbjct: 134 PIPKPMPFPK----PMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPMPKPKPKPKPMPK 189
Query: 601 HVDKPYEVKVKVPTPYPV 654
H KP+ + P P P+
Sbjct: 190 HKPKPFPKPMLFPKPMPI 207
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/75 (22%), Positives = 27/75 (36%)
Frame = +1
Query: 427 TSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHV 606
+ P P+ +P P P P + P P+ P+P K +P+ +
Sbjct: 100 SEPFPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMPK 159
Query: 607 DKPYEVKVKVPTPYP 651
KP P P+P
Sbjct: 160 SKPKSEPFPNPMPFP 174
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/73 (20%), Positives = 27/73 (36%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDK 612
P+P + P + P P+ + P P P + P+P+ P + +
Sbjct: 186 PMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPM 245
Query: 613 PYEVKVKVPTPYP 651
P+ + P P P
Sbjct: 246 PFPKPMPKPKPKP 258
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDK 612
P P + PM P P P+ P+P P +P+P K P+ + K
Sbjct: 178 PKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPK 237
Query: 613 PYEVKVKVPTPYPV 654
P + +P P P+
Sbjct: 238 PMPIPKPMPFPKPM 251
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/74 (27%), Positives = 26/74 (35%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDK 612
P P PM P P P FP P + P P+P K +P + K
Sbjct: 84 PKPMPFPKPMPKSKPKSEPFPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPK 143
Query: 613 PYEVKVKVPTPYPV 654
P +P P P+
Sbjct: 144 PMLFPKPMPFPKPM 157
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/73 (23%), Positives = 25/73 (34%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDK 612
P P + P P P P + P + P P+P K +P+ + K
Sbjct: 38 PKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSK 97
Query: 613 PYEVKVKVPTPYP 651
P P P+P
Sbjct: 98 PKSEPFPNPMPFP 110
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/76 (22%), Positives = 27/76 (35%)
Frame = +1
Query: 424 NTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVH 603
N P P + P P+ P + P+P P+ P+P K +P
Sbjct: 105 NPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKP-- 162
Query: 604 VDKPYEVKVKVPTPYP 651
+P+ + P P P
Sbjct: 163 KSEPFPNPMPFPKPMP 178
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +1
Query: 475 PYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDKPYEVKVKVPTPYP 651
P+ +P P + P P P + P+P+ K + + + + KP +P P P
Sbjct: 166 PFPNPMPFPKPMPKPKPKPKPMPKHKPKPF--PKPMLFPKPMPIPKPMPFPKPMPKPMP 222
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/73 (24%), Positives = 27/73 (36%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDK 612
P P + P P+ P P + P +P+ P+P K P + H K
Sbjct: 2 PEPKSKPTPKPKSEPFPKPMPKSK----PKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPK 57
Query: 613 PYEVKVKVPTPYP 651
P+ + P P P
Sbjct: 58 PFPKPMLFPKPMP 70
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/71 (23%), Positives = 26/71 (36%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDK 612
P P PM P P P+ + P P+ P+P + K +P+ + K
Sbjct: 196 PKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPK 255
Query: 613 PYEVKVKVPTP 645
P + P P
Sbjct: 256 PKPKPMPKPKP 266
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Frame = +1
Query: 433 PIPSRRKYPMR*KCPYLSPTPLKR----KFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKV 600
P+P + P P L P P+ + FP P P P P + K P+ +
Sbjct: 50 PMPKHKPKPF--PKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPM 107
Query: 601 HVDKPYEVKVKVPTPYP 651
KP + P P+P
Sbjct: 108 PFPKPKPMPKHKPKPFP 124
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/65 (26%), Positives = 23/65 (35%)
Frame = +1
Query: 457 PMR*KCPYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDKPYEVKVKV 636
PM P P P+ P+P + P P+P K +P + KP
Sbjct: 198 PMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKPK 257
Query: 637 PTPYP 651
P P P
Sbjct: 258 PKPMP 262
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 541 PVYVPEPYTVEKKVPYEVKVHVDKPYEVKVKVPTPYPV 654
P+ +P P V VP V V + P + + +P P PV
Sbjct: 6 PIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPV 43
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical protein
F41H10.3b protein.
Length = 1005
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 397 RCLFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPL----KRKFPLPSRNTSNTPVYVPEPY 564
R L+ I+ + PI ++ YP++ P + P+P+ PS+N ++ V +
Sbjct: 768 RVLYSIKPQ-IPPIANKTVYPVKKLTPSVVPSPMILNGNTATASPSKNAASVVVRNAYTF 826
Query: 565 TVEKKVPYEVKVHVDKPYEVKVKVP 639
++++K PY KP + ++ P
Sbjct: 827 SLQQKAPYYPAGMRPKPTQNGIETP 851
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical protein
F41H10.3a protein.
Length = 1140
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 397 RCLFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPL----KRKFPLPSRNTSNTPVYVPEPY 564
R L+ I+ + PI ++ YP++ P + P+P+ PS+N ++ V +
Sbjct: 768 RVLYSIKPQ-IPPIANKTVYPVKKLTPSVVPSPMILNGNTATASPSKNAASVVVRNAYTF 826
Query: 565 TVEKKVPYEVKVHVDKPYEVKVKVP 639
++++K PY KP + ++ P
Sbjct: 827 SLQQKAPYYPAGMRPKPTQNGIETP 851
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +1
Query: 415 QSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRN---TSNTPVYVPEPYTVEKKVP 585
QS ++ P P P + P P P P P N +SN V E ++V KK
Sbjct: 392 QSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMSNNNSSSNNVPSVQEQHSVPKK-- 449
Query: 586 YEVKVHVDKPYEVKVKVPTP 645
EV+ +PYE + V TP
Sbjct: 450 EEVRELDYRPYEKENGVHTP 469
>Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical
protein B0379.7 protein.
Length = 409
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 487 PTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPYEVKVHVDKPYE-VKVKVPTPYPV 654
P L++ P P+ ++ PV PEP + P +V V + + +P P PV
Sbjct: 61 PQQLEQPTPAPAPESAPAPVQCPEPTPEVPQQPTQVSAPVQEITQGAPAPIPEPTPV 117
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +1
Query: 415 QSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRN---TSNTPVYVPEPYTVEKKVP 585
QS ++ P P P + P P P P P N +SN V E ++V KK
Sbjct: 392 QSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMSNNNSSSNNVPSVQEQHSVPKK-- 449
Query: 586 YEVKVHVDKPYEVKVKVPTP 645
EV+ +PYE + V TP
Sbjct: 450 EEVRELDYRPYEKENGVHTP 469
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +1
Query: 415 QSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRN---TSNTPVYVPEPYTVEKKVP 585
QS ++ P P P + P P P P P N +SN V E ++V KK
Sbjct: 392 QSSSSPPPPEPVPTPKVAQTPAPVPVPTPAAAPRPMSNNNSSSNNVPSVQEQHSVPKK-- 449
Query: 586 YEVKVHVDKPYEVKVKVPTP 645
EV+ +PYE + V TP
Sbjct: 450 EEVRELDYRPYEKENGVHTP 469
>Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical
protein F53B6.6 protein.
Length = 610
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 185 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNR 27
+++F ++SE+ S S VI + +L LF C+ FL+ + N H + R
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNRQLLHHASKR 605
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 182 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 66
+ IAT ++S+I + ++ P+ +F C RC + G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -3
Query: 180 SLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCTSLWSP 7
S H Y + C CP + R+P C +P P P PP PC + + P
Sbjct: 12 SFHFAFAQYPFGRGGCGGCPTPMCQP-RMP--CAAPMPMPMPMPVCPPPPPCPAQFCP 66
>Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +1
Query: 427 TSPIPS-RRKYPMR*KC--PYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPY 588
T +P+ R PMR C SP P P + TPV+VP P +PY
Sbjct: 107 TLDLPNIERVSPMRNSCHPSNNSPPPSSWYAPTSYSQSKETPVFVPPPPPPTDAMPY 163
>Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +1
Query: 427 TSPIPS-RRKYPMR*KC--PYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPY 588
T +P+ R PMR C SP P P + TPV+VP P +PY
Sbjct: 107 TLDLPNIERVSPMRNSCHPSNNSPPPSSWYAPTSYSQSKETPVFVPPPPPPTDAMPY 163
>Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +1
Query: 427 TSPIPS-RRKYPMR*KC--PYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPY 588
T +P+ R PMR C SP P P + TPV+VP P +PY
Sbjct: 107 TLDLPNIERVSPMRNSCHPSNNSPPPSSWYAPTSYSQSKETPVFVPPPPPPTDAMPY 163
>Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +1
Query: 427 TSPIPS-RRKYPMR*KC--PYLSPTPLKRKFPLPSRNTSNTPVYVPEPYTVEKKVPY 588
T +P+ R PMR C SP P P + TPV+VP P +PY
Sbjct: 107 TLDLPNIERVSPMRNSCHPSNNSPPPSSWYAPTSYSQSKETPVFVPPPPPPTDAMPY 163
>U80437-4|AAK68244.1| 90|Caenorhabditis elegans Neurabin protein
1, isoform c protein.
Length = 90
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 78 SPPWQRQPRPTMPPK*PCTSLWSP 7
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protein
1, isoform b protein.
Length = 561
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 78 SPPWQRQPRPTMPPK*PCTSLWSP 7
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protein
1, isoform d protein.
Length = 658
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 78 SPPWQRQPRPTMPPK*PCTSLWSP 7
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protein
1, isoform a protein.
Length = 721
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 78 SPPWQRQPRPTMPPK*PCTSLWSP 7
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,590,293
Number of Sequences: 27780
Number of extensions: 231845
Number of successful extensions: 986
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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