Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5251
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    26   3.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   8.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   8.0  

>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 382 LSASRPDNIGTFANFQKYDVTSMHP 456
           L   R DN+ T+A  QK D+T   P
Sbjct: 129 LEVERDDNVFTYAKLQKSDMTQKCP 153


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 190 NSLLRNSVFAGFDNNYYVNYKFFQTILIFSLV 285
           NSL+ N + +GF+ N ++N  F QT  + +L+
Sbjct: 641 NSLI-NVIKSGFEQNEFINPYFLQTNYLKNLL 671


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 167  VGSTLYIKIRYCGIQFL 217
            + STLY+K+ +C   FL
Sbjct: 1204 ISSTLYLKVSFCSSNFL 1220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,197
Number of Sequences: 5004
Number of extensions: 42594
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)