Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5251
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    31   0.88 
02_05_1092 - 34049640-34049934,34050013-34050147,34050229-340503...    27   8.2  

>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 433 ISENLQMSLCYQDERRKDLHLNSFHYSECEQLCEKVHETLNIQS 302
           I+  + +SL  +++R+        H  E EQL   + E+LN++S
Sbjct: 485 IARAISLSLLEEEQRKAKAIEKDMHLEEDEQLARAIQESLNVES 528


>02_05_1092 -
           34049640-34049934,34050013-34050147,34050229-34050305,
           34050541-34050624,34050699-34050849,34050944-34051060,
           34051162-34051219,34051412-34051502,34051601-34051648,
           34051724-34051792,34051881-34051904,34052125-34052233,
           34052338-34052375,34052524-34052672,34052765-34052780
          Length = 486

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 391 RRKDLHLNSFHYSECEQLCEKVHETLNIQSK*SVRIPR 278
           RR+   LN   + E  ++C+K+HE   + S  S  +P+
Sbjct: 244 RRRSARLNPGSF-EVAEICDKLHEDATVPSAPSSNVPK 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,006,309
Number of Sequences: 37544
Number of extensions: 210572
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)