Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5251
         (580 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004899-1|AAO47877.1|  557|Drosophila melanogaster LD10242p pro...    29   6.0  
BT001297-1|AAN71052.1|  457|Drosophila melanogaster AT11570p pro...    29   6.0  
AE013599-2941|AAM68425.1|  435|Drosophila melanogaster CG11025-P...    29   6.0  
AE013599-2940|AAF57527.2|  557|Drosophila melanogaster CG11025-P...    29   6.0  
AB018047-1|BAA84921.1|  412|Drosophila melanogaster protein ( Dr...    29   6.0  

>BT004899-1|AAO47877.1|  557|Drosophila melanogaster LD10242p
           protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 328 LFRTAVHIQSNEMNSDVDLSAS-RPDNIGTFANFQKYDVTSMHPHYYL 468
           +F+T V+ + NE+ S+V L  S  PD+I  FA     DV  ++P Y L
Sbjct: 171 IFKTDVNKRLNELKSEVILELSDDPDSIQLFAP----DVRHLNPRYRL 214


>BT001297-1|AAN71052.1|  457|Drosophila melanogaster AT11570p
           protein.
          Length = 457

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 328 LFRTAVHIQSNEMNSDVDLSAS-RPDNIGTFANFQKYDVTSMHPHYYL 468
           +F+T V+ + NE+ S+V L  S  PD+I  FA     DV  ++P Y L
Sbjct: 71  IFKTDVNKRLNELKSEVILELSDDPDSIQLFAP----DVRHLNPRYRL 114


>AE013599-2941|AAM68425.1|  435|Drosophila melanogaster CG11025-PB,
           isoform B protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 328 LFRTAVHIQSNEMNSDVDLSAS-RPDNIGTFANFQKYDVTSMHPHYYL 468
           +F+T V+ + NE+ S+V L  S  PD+I  FA     DV  ++P Y L
Sbjct: 49  IFKTDVNKRLNELKSEVILELSDDPDSIQLFAP----DVRHLNPRYRL 92


>AE013599-2940|AAF57527.2|  557|Drosophila melanogaster CG11025-PA,
           isoform A protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 328 LFRTAVHIQSNEMNSDVDLSAS-RPDNIGTFANFQKYDVTSMHPHYYL 468
           +F+T V+ + NE+ S+V L  S  PD+I  FA     DV  ++P Y L
Sbjct: 171 IFKTDVNKRLNELKSEVILELSDDPDSIQLFAP----DVRHLNPRYRL 214


>AB018047-1|BAA84921.1|  412|Drosophila melanogaster protein (
           Drosophila melanogastermRNA, partial cds, similar to
           human isopeptidase T-3.).
          Length = 412

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 328 LFRTAVHIQSNEMNSDVDLSAS-RPDNIGTFANFQKYDVTSMHPHYYL 468
           +F+T V+ + NE+ S+V L  S  PD+I  FA     DV  ++P Y L
Sbjct: 83  IFKTDVNKRLNELKSEVILELSDDPDSIQLFAP----DVRHLNPRYRL 126


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,480,701
Number of Sequences: 53049
Number of extensions: 404402
Number of successful extensions: 909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2296745289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)