Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5251
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical ...    32   0.26 
AC006827-3|AAF60882.1|  269|Caenorhabditis elegans Hypothetical ...    29   1.8  
AL023822-1|CAD21649.1|  672|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL021572-3|CAA16517.2|  672|Caenorhabditis elegans Hypothetical ...    29   3.2  
U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z82256-5|CAB54184.1|  210|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U41272-1|AAA82446.2|  584|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical
           protein C50E10.8 protein.
          Length = 362

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 229 NNYYVNYKFFQTILIFSLVSGQTILIEYLK--FHELFRTAVHIQSNEMNSDVDLS 387
           N+   N KF+Q +LIF L+   T+L+  +   F  L RTA H   N + + V LS
Sbjct: 20  NDVAYNQKFYQFLLIFELLLSLTVLVFTITSGFIILTRTAFHKNFNSLIAIVVLS 74


>AC006827-3|AAF60882.1|  269|Caenorhabditis elegans Hypothetical
           protein Y81B9A.2 protein.
          Length = 269

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 346 HIQSNEMNSDVD-LSASRPDNIGTFANFQKYDVTSMHPHYY 465
           H++ N +NSD D +S  +P  +    NF K ++   HP  Y
Sbjct: 160 HLE-NYLNSDSDTVSNEKPKTLAQLKNFSKSNLVEYHPSMY 199


>AL023822-1|CAD21649.1|  672|Caenorhabditis elegans Hypothetical
           protein W06H3.3 protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 433 ISENLQMSLCYQDERRKDLHLNSFHYSECEQLCEKVHETLNI 308
           I++ L++S    +  RKDL  N  H++   +LC+   + +NI
Sbjct: 272 ITQRLRLSEI-SENIRKDLKFNMNHWTNLSELCDTFQQVVNI 312


>AL021572-3|CAA16517.2|  672|Caenorhabditis elegans Hypothetical
           protein W06H3.3 protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 433 ISENLQMSLCYQDERRKDLHLNSFHYSECEQLCEKVHETLNI 308
           I++ L++S    +  RKDL  N  H++   +LC+   + +NI
Sbjct: 272 ITQRLRLSEI-SENIRKDLKFNMNHWTNLSELCDTFQQVVNI 312


>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 175 YFVY*NSLLRNSVFAGFDNNYYVNYKFFQTILIFSLVSGQTILIEYLK 318
           Y ++ +SLLRNS ++   N +  +   F ++ +  LV  + +L+ Y K
Sbjct: 143 YDIFQDSLLRNSYYSCIFNTFLAHVCDFASVWLIVLVGLERLLLLYRK 190


>Z82256-5|CAB54184.1|  210|Caenorhabditis elegans Hypothetical
           protein B0513.2 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -1

Query: 427 ENLQMSLCYQDERRKDLHLNSFHYSECEQLCEKVHETL 314
           E L++S+  Q   ++  H+N  H +EC+Q  E++ +++
Sbjct: 53  EFLELSMLKQ---KRISHMNKIHATECDQFAEEIDQSI 87


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 301 LIEYLKFHELFRTAVHIQSNEMNSDVDLSASRPD 402
           L++  K+H  + TA HI+S+    D +++ S PD
Sbjct: 352 LVDAGKYHPKYLTADHIRSSTPKRDANVTESVPD 385


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical
           protein R09A8.1 protein.
          Length = 1095

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 358 NEMNSDVD-LSASRPDNIGTFANFQKYDVTSMHP 456
           N +NSD D +S  +P  +    NF K ++   HP
Sbjct: 801 NYLNSDSDTVSNEKPKTLAQLKNFSKSNLVEYHP 834


>U41272-1|AAA82446.2|  584|Caenorhabditis elegans Hypothetical
           protein T03G11.4 protein.
          Length = 584

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 283 PRKI*EWFEKIYNSHNSYYQTLQKLNSAIANFN-IQSRSDLYI 158
           PRK  +  EKI  + ++ Y     L   IA+FN I  + DLY+
Sbjct: 432 PRKHLDMAEKIGETCHNMYDNPTGLGPEIAHFNMIPGKEDLYV 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,559,966
Number of Sequences: 27780
Number of extensions: 230527
Number of successful extensions: 607
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)