Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5250
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.059
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 34 0.10
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 31 0.55
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 0.73
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 30 1.7
03_02_0123 + 5745390-5745576,5745993-5746082,5746255-5746351,574... 30 1.7
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70... 29 2.9
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475... 29 3.9
04_03_0799 - 19805190-19805749,19806316-19806403 29 3.9
03_01_0540 - 4055635-4055743,4055829-4055981,4056037-4056104,405... 29 3.9
02_04_0413 + 22681957-22682035,22682253-22682788 28 6.8
02_01_0701 + 5238179-5238461,5238540-5238949,5240413-5240793,524... 28 6.8
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966 27 8.9
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 27 8.9
01_05_0624 + 23772613-23774671,23774737-23775596 27 8.9
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 34.7 bits (76), Expect = 0.059
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Frame = +3
Query: 147 PRCQARCCYPCSLP------RGPCSVPGCPSC-LP-RGPCSVPGRPSCLP 272
P C C PCS P RG C P P C LP PC +P P C P
Sbjct: 107 PGCPCSCSTPCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLPCPPPCPP 156
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 153 CQARCCYPCSLP-RGPCSVPGCPSCLPRG 236
C C PC LP PC +P P C PRG
Sbjct: 130 CPPPCPPPCPLPCPPPCPLPCPPPCPPRG 158
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 171 YPCSLPRGPCSVPGCPSCLPR--GPCSVPGRPSC-LPHFSTP 287
YP P G C+ P C C P+ P P +P+C P +S+P
Sbjct: 113 YPPPPPCGGCATPHCCDCHPKPPPPAPAPAKPACGCPAWSSP 154
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 120 HCAP*PASAPRCQARC-CYPCSLPRGPCSVPGCPSCLPRGPCSVPGRPSC 266
HC P P P C C C G C+ P P C G CS+ +C
Sbjct: 120 HCCPEPPPPPPKPKPCECTYCGGHGGGCNKPAVPPC--AGGCSISDGGAC 167
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = +3
Query: 108 FFPKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGCPSCLPRGPCSVPGRPSCLPHFSTP 287
F P P P P Q+ Y S P P P P+CL P P P LP+ S P
Sbjct: 561 FSPPPPPPPPPPPPLPQSN--YASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVP 618
>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
Length = 138
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 174 PCSLPRGPCSVPGCPSCLPRGPC-SVPG 254
PC P PC PGC SC P C + PG
Sbjct: 94 PCPPPPPPCC-PGCNSCRPACQCAAAPG 120
>03_02_0123 +
5745390-5745576,5745993-5746082,5746255-5746351,
5746446-5746584
Length = 170
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/73 (30%), Positives = 28/73 (38%)
Frame = +3
Query: 135 PASAPRCQARCCYPCSLPRGPCSVPGCPSCLPRGPCSVPGRPSCLPHFSTPLLLG*ICLV 314
P +APRC+ RC + P G LP L +S+P+ G I
Sbjct: 12 PVTAPRCRGRCSAATAATSAPEKTAGHVGRLPLAIVPAAAASLSLVLWSSPVHAG-IMSG 70
Query: 315 PKHRPS*PAPDYP 353
K S P PD P
Sbjct: 71 FKGMESVPGPDLP 83
>04_01_0070 -
706640-706747,707221-707307,707397-707502,707585-707693,
707766-708145,708508-708601,709351-709475,709633-709674,
710822-710892,710979-711060,711157-711277,712404-712713
Length = 544
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 315 PKHRPS*PAPDYPIRRSCS--QVGRRCSRSLPHCSRP 419
P P P PD+P+ RSC +VG R P RP
Sbjct: 45 PPFPPKNPRPDFPLFRSCRTVKVGNRTCSLQPLVGRP 81
>06_03_1282 -
28946363-28946533,28947234-28947272,28947399-28947566,
28947605-28947697,28948135-28948215,28948409-28948499,
28948657-28948728,28948803-28948903,28949283-28949381,
28949631-28949954
Length = 412
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 25 IVVLCALV-AVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQ 144
IV+L A V AV L P HY+P VSS S P+
Sbjct: 15 IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNSCSSRPPPE 55
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +3
Query: 120 HCAP*PASAPRCQARCCYPCSLPRGPCSVPGCPSCLPRGPCSVPGRPSC 266
HC P P C + C G C+ P C G CS+ +C
Sbjct: 124 HCCPAPPKPKPKPCECTHHCGGHGGGCNKPAVSPC--GGGCSISDGGAC 170
>03_01_0540 -
4055635-4055743,4055829-4055981,4056037-4056104,
4056486-4056580,4057180-4057241,4057371-4057410,
4058124-4059141,4059231-4059611,4059873-4059880,
4061005-4061067,4061416-4061719
Length = 766
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 174 PCSLPRGPCSVPGCPSCLPRGPCSVPGRPSCLPHFS 281
P +L + P S+P P P G P RP PH +
Sbjct: 132 PDALLQSPISIPVLPPPDPSGCLLCPARPGAAPHLT 167
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Frame = +3
Query: 123 CAP*PASA---PRCQARCCYPCSLPRGPCSVPGCP----SCLPRGPCSVP 251
C P P+ P C+ CC C G C P P C P PC P
Sbjct: 129 CPPSPSCENHHPPCKPGCCC-CGCSGGECPPPPSPPCQHECPPTPPCEHP 177
>02_01_0701 +
5238179-5238461,5238540-5238949,5240413-5240793,
5241112-5241244,5241495-5241622,5241714-5241914
Length = 511
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Frame = +1
Query: 409 APAPVTYHAAPATVSYHSAPVAKIVAHQAEE----IAYPKYEYNYSVADGHSGDNKSQQE 576
AP P + A+ A + AP A A AEE I P Y +S H + + E
Sbjct: 53 APPPPSTSASSAASAAAPAPAAAAAAAAAEESPCTITIPSYSAWFSYDSIHETERRLMPE 112
Query: 577 VRDGDVVKGSYS 612
+G+ S S
Sbjct: 113 FFEGEAAAASGS 124
>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
Length = 766
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 177 CSLPRGPCSVPGCPSCLPRG-PCSVP-GRP 260
C+ P+ PCSVPG LP G C P RP
Sbjct: 322 CADPKYPCSVPGTCHNLPGGFECLCPRSRP 351
>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 340 AGHDGRCFGTRQIQPRSSGVEKCGRQL 260
AG GR FG+ + + RSSG + G+ L
Sbjct: 1064 AGRGGRSFGSHEDEDRSSGNPQSGKAL 1090
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 132 MAHNALGRNGFSGRVVHGSSQESSFRHRDQSAQYYD 25
+ H L R GF GRV H S+ + D +++ YD
Sbjct: 159 LTHLNLARMGFYGRVPHQLGNLSNLQFLDITSEIYD 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.124 0.352
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,543,441
Number of Sequences: 37544
Number of extensions: 305882
Number of successful extensions: 884
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -