Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5249
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    35   0.025
Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    27   3.7  

>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 34.7 bits (76), Expect = 0.025
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 240 LIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVFRYSALIRWQPSIFNKLVY 67
           LII F LNY T  F C +  L +  + +P D +   + + R+  LI   P +F  +++
Sbjct: 112 LIITFYLNYVTMLFPCLVALLRLNLIIFPSDFQKINIKILRWLPLIFLYPILFTVIMF 169


>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -1

Query: 246 LCLIIVFLLNYTTSEFVCAIRNLFILQVGYPIDLKLQLLLVFRYSALIRWQPSIFNKLVY 67
           + +II F LNY T  F C +  L +  + +P + +     +  +  LI   P  F  +++
Sbjct: 110 ILIIITFYLNYATMLFPCLVALLRLNSIIFPSNYQKINARILDWLPLIFIYPFFFTVIMF 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,855,930
Number of Sequences: 27780
Number of extensions: 161868
Number of successful extensions: 293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)