Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5245
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    29   0.73 
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   0.97 
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    27   2.2  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    27   2.2  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.9  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   3.9  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   5.2  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   6.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  

>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 620 GPTPSXTDVIFTAIFGMSVTG*TSQRWRPHPGGWAAESVCYF 495
           GP PS  D+    I G++    T  +W  HPGGW    V  F
Sbjct: 362 GPPPSYPDL---KIPGVNCPIPTGAQWGFHPGGWGKPPVDQF 400


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +3

Query: 153 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 278
           + CD+ W C+N    G+  L  C NG+    +D   K L    D L N
Sbjct: 30  LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 304 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 426
           L+ Q+PL  + D  A+   +  +T  G+AGT +  A+  +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 304 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 426
           L+ Q+PL  + D  A+   +  +T  G+AGT +  A+  +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 295 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 459
           GH+ +  S   T    TA+S + +SAT S    T+   +   + D+ T   PAS+
Sbjct: 141 GHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVTLPPPASS 195


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = +1

Query: 220 SLSTPQIPNXXXXXXXXXXXLSAERGHSL----SPQSPLLTVRDCTASSLMKTSATFSGT 387
           SLST  IP+           LS+    S     S  S +++    ++SS   TS+T S +
Sbjct: 234 SLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSS 293

Query: 388 AGTEKPPAISAAPDLPTTESPAS 456
           + +   P  +++    ++ S +S
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSS 316


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 177 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 287
           C N V  LK   NG    +  S+ L+E C Y  N  C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 313  QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 459
            Q+   T    T ++ ++T+   +GTAGTE   A +A    PTT +  +A
Sbjct: 1191 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1238



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 313  QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 459
            Q+   T    T ++ ++T+   +GTAGTE   A +A    PTT +  +A
Sbjct: 1273 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1320


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 351 FPDENKCDVFWNCW 392
           F D N  D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +1

Query: 280 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 459
           +S     S+ PQS        +ASS   T +T S          +S +  +P+T S   +
Sbjct: 468 VSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPS 527

Query: 460 CGLI 471
             +I
Sbjct: 528 SSII 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,186
Number of Sequences: 5004
Number of extensions: 50693
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)