Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5244
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    27   0.18 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 250 CYSRMTSRSDLRDACSPGPGRLARRNR*PYRGSP 149
           C+SR   R+ +R  C+  PGR+ RR +  +R  P
Sbjct: 392 CWSRDFRRAFVRILCACCPGRVRRRYQPAFRCKP 425


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -2

Query: 321 FADREGGVLQVPLHGVP----HFPSGRGATAG*RHAQTFE 214
           + +R  G  ++P HG+P     +  G  AT G   A  FE
Sbjct: 433 YGNRFSGEYEIPAHGLPPSATRYDLGAVATVGTTVAPCFE 472


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 71  PQ*TVRTFTGSRIYRTPTTTCSSR*AGTPPIGSTVPPCQ 187
           P  T+ T T +    T TTT ++    T    +T PP Q
Sbjct: 654 PATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQ 692


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,228
Number of Sequences: 438
Number of extensions: 4620
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)