Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5243
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   1.2  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   3.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   6.4  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   6.4  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   8.4  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   8.4  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    25   8.4  

>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 347 TCFWTDSTIVMGWIRMSPHLLKTFVQNRVTELNELTGDSVWLHVNSK 487
           T F    +I++ ++      LKT  +N+V E  E+TG+ + +H  S+
Sbjct: 300 TSFMGFLSIILIYLFCEETYLKTITENKVQEYREITGNQL-VHARSE 345


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 59  LTHLNELRIPRQIRGSNTQFIELHIFTDASQNAYGACAYIRTYNLNTEITVRLLCAKSR 235
           LT L+ L  P  +   +T++ +L I+T +         + R  NL T   VR    KSR
Sbjct: 78  LTDLSYLNEPSVLDALSTRYNQLQIYTYSGIVLIAVNPFQRLPNLYTHEIVRAYSEKSR 136


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 370 YRNGLDTHVTSFIKNLCSKS 429
           + +GLD +VT+F+ +L SKS
Sbjct: 186 HSDGLDCYVTAFLLDLSSKS 205


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 300 LAPSRAPHNSSRGMLIVFKGATLLLAHSNRTVISVFKL 187
           L P+ +P+  +R  LIVF     LL  S  T+IS  +L
Sbjct: 569 LCPNGSPNYRNRYKLIVFNLLIALLILSILTIISASRL 606


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 89  RQIRGSNTQFIELHIFTDASQNAYG 163
           R+I     + +E HIF   +QN YG
Sbjct: 299 RRIHNIKARLLETHIFHPNTQNHYG 323


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 2   WDTP-VSQEIAMTWSNFIKTLTHLNELRIPRQIRGSNT 112
           +D P V +++ M   NF  T+T L+   I   I  SNT
Sbjct: 421 FDLPNVEEKVEMIEPNFANTMTTLDNEEINTSISQSNT 458


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 335 SFTNTCFWTDSTIVMGWIRMSPHLLKTFV 421
           +FT  CFW    + M      P LL T V
Sbjct: 565 AFTMVCFWLVEALAMAGCSGYPKLLSTAV 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,054
Number of Sequences: 5004
Number of extensions: 40729
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)