Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5243
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    72   2e-13
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    72   2e-13
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    60   7e-10
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    48   4e-06
U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical ...    27   7.6  
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 10/176 (5%)
 Frame = +2

Query: 2    WDTPVSQEIAMTWSNFIKTLTHLNELRIPRQIRGS-NTQFIELHIFTDASQNAYGACAYI 178
            W T +  ++   W   IK +   +++ +PRQ+    + + + + +F+DAS++ Y    Y+
Sbjct: 1396 WKTKIPGKLLTAWKK-IKEMYRDDKITVPRQLTNDYDYESVNILVFSDASKDIYATTIYL 1454

Query: 179  RTYNLNTEITVRLLCAKSRVAPLK--TISIPRLELCGALLGARLYKKIINSLKLSFTNTC 352
            +    +    ++LL +K+++ P    T++IP++EL    +GA L       L+L      
Sbjct: 1455 QYQYKDKPPVIQLLTSKNKIKPANCNTLTIPKMELLAINIGANLAYSTSEQLRLDVAEVI 1514

Query: 353  FWTDSTIVMGWIRMSPHLLKTFVQNRVTELNELTG-------DSVWLHVNSKNNPA 499
            F+TDS+    WI +S    + +V NRV  + ++          S + H  +K+NPA
Sbjct: 1515 FFTDSSCASYWI-LSNKTTRQWVSNRVETIYQVKEKFATDGITSSFRHCPTKDNPA 1569


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 45/176 (25%), Positives = 88/176 (50%), Gaps = 10/176 (5%)
 Frame = +2

Query: 2    WDTPVSQEIAMTWSNFIKTLTHLNELRIPRQIRGS-NTQFIELHIFTDASQNAYGACAYI 178
            W T +  ++   W   IK +   +++ +PRQ+    + + + + +F+DAS++ Y    Y+
Sbjct: 1396 WKTKIPGKLLTAWKK-IKEMYRDDKITVPRQLTNDYDYESVNILVFSDASKDIYATTIYL 1454

Query: 179  RTYNLNTEITVRLLCAKSRVAPLK--TISIPRLELCGALLGARLYKKIINSLKLSFTNTC 352
            +    +    ++LL +K+++ P    T++IP++EL    +GA L       L+L      
Sbjct: 1455 QYQYKDKPPVIQLLTSKNKIKPANCNTLTIPKMELLAINIGANLAYSTSEQLRLDVAEVI 1514

Query: 353  FWTDSTIVMGWIRMSPHLLKTFVQNRVTELNELTG-------DSVWLHVNSKNNPA 499
            F+TDS+    WI +S    + +V NRV  + ++          S + H  +K+NPA
Sbjct: 1515 FFTDSSCASYWI-LSNKTTRQWVSNRVETIYQVKEKFATDGITSSFRHCPTKDNPA 1569


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical protein
            K06C4.15 protein.
          Length = 1067

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
 Frame = +2

Query: 2    WDTPVSQEIAMTWSNFIKTLTHLNELRIPRQIRGS-NTQFIELHIFTDASQNAYGACAYI 178
            W  P+ + +   W     +      + +PR++      + I+L IF+DASQ+ Y A AY 
Sbjct: 938  WKDPIPKHLLDDWQAIQASFID-RTITVPRRLTTDFEYKEIQLLIFSDASQDIYAAAAYA 996

Query: 179  R-TYNLNTEITVRLLCAKSRVAPLKTIS--IPRLELCGALLGARLYKKIINSLKLSFTNT 349
              +Y  +    + L+ +K+++ P K  +  IP+LEL G  +G+ L   I+  L    TN 
Sbjct: 997  YFSYGDDRPPVISLITSKNKIKPSKETNWTIPKLELLGIEIGSNLASSIVKELSCKVTNI 1056

Query: 350  CFWTDSTIVM 379
              +TDS+  +
Sbjct: 1057 RLFTDSSCAL 1066


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
           protein ZC132.5 protein.
          Length = 1277

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 13/179 (7%)
 Frame = +2

Query: 2   WDTPVSQEIAMTWSNFIKTLTHLNELRIPRQIRGSNTQFIELHIFTDASQNAYGACAYIR 181
           WDTP+ ++    + +    +   ++    R I   + +  E+  F DASQ A  AC Y++
Sbjct: 473 WDTPLKEKHEKEYKSITDNIRGFSK-DFNRHIIDKSGEN-EIIAFADASQEAIAACIYVK 530

Query: 182 TYNLNTEITVRLLCAKSRVAPLK-TISIPRLELCGALLGARLYKKIINSLK---LSFTNT 349
                 +  V LL  KS V  LK   +IP+LE+    +        + +L+   +  T  
Sbjct: 531 -----NKYGVNLLFGKSNVKSLKEKWTIPKLEVQALKVATDRALSTLTALQDGDIKVTKV 585

Query: 350 CFWTDSTIVMGWIRMSPHLLKT--FVQNRVTEL---NEL---TGDSVWL-HVNSKNNPA 499
             ++DS I + W+R  P   +    ++NR+  +   NE     G  V+  +VN+  NPA
Sbjct: 586 ILFSDSEITLAWLRSEPGKKEVGILIKNRIESIRKTNETMLQKGVQVFFGYVNTLENPA 644


>U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical
           protein C31H1.8 protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 41  SNFIKTLTHLNELRIPRQIRGSNTQFIELHIFTDASQNAYGACAYIRT-YNLNTEITVRL 217
           S+++  + H    ++ R++RG+   F+E+      ++ +Y +   I + +  N  I V+ 
Sbjct: 243 SDYVYAIVHSRNEKLERRLRGAIDSFMEIESKIRQARISYVSSFTINSPHTPNVSIIVKF 302

Query: 218 LCAKSRVAPLKT 253
            C K   +  KT
Sbjct: 303 CCLKPCNSDAKT 314


>AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical
           protein Y6D1A.1 protein.
          Length = 681

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 65  HLNELRIPRQIRGSNTQFIELHIFTDASQNAYGACAYIRTYNLNTEITVRLLCAK 229
           ++N  R    + G  T+ +  H F D     +  C Y +  + N E+    LCAK
Sbjct: 284 NVNNRRKALIMAGRCTRCLGRHSFKDCRSAKFNVCMYCKDEDPNVELHNYGLCAK 338


>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
            protein Y92H12A.5 protein.
          Length = 1375

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 352  FLDGFDYRNGLDTHVTSFI 408
            +++GFDY+N    HV SF+
Sbjct: 1002 WIEGFDYQNSRQNHVHSFL 1020


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,139,749
Number of Sequences: 27780
Number of extensions: 219027
Number of successful extensions: 437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)