Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5242
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0750 - 21226896-21227011,21227116-21227370,21227469-212287...    31   1.0  
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564...    29   4.1  
03_05_0774 - 27615899-27617134                                         27   9.4  

>07_03_0750 -
           21226896-21227011,21227116-21227370,21227469-21228785,
           21228918-21228984
          Length = 584

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 269 VSRGIASVGPNSAPVVDSAQHYSFH 195
           +SR  A  GPN++PVVD A   ++H
Sbjct: 215 ISRDYAVFGPNASPVVDQASGITYH 239


>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
            21556524-21556620,21557113-21557141,21557620-21557781,
            21557981-21558061,21558156-21558314,21558394-21558510,
            21558598-21558666,21558753-21558831,21560884-21561050,
            21561109-21561229,21561522-21561649,21562293-21562361,
            21562408-21562539,21562619-21562991,21563274-21563398,
            21563500-21563655,21563785-21564198,21564634-21564691,
            21566522-21566648,21568047-21568305,21569005-21569104,
            21569231-21569317,21569454-21569692,21569914-21569999,
            21570409-21570532,21571111-21574332
          Length = 2444

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 509  NSQILT*WFNYRFHEYLNLRRALCGTXGFVESGVGGPRWG 628
            +SQ+ T    Y + +Y+ L+  +  T GF E G   PR G
Sbjct: 2030 DSQLSTCVLFYNYSDYIRLKHMV--TQGFAEQGTSAPRGG 2067


>03_05_0774 - 27615899-27617134
          Length = 411

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 131 SPSSQATDSTRTMTGA*GRLQNEKSSAAQNLPPERNWDPLRR 256
           SPS  +  + + M GA G L   +S A   LPP R  D  ++
Sbjct: 153 SPSRSSHGAVKKMDGAVGVLAAPQSEAPLPLPPPRREDAAKK 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,545,443
Number of Sequences: 37544
Number of extensions: 308800
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)