Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5242
         (632 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126042-1|BAC86409.1|  265|Homo sapiens protein ( Homo sapiens ...    31   2.6  
BC057236-1|AAH57236.1|  270|Homo sapiens ATP8B4 protein protein.       31   4.5  
AK025125-1|BAB15072.1|  195|Homo sapiens roto-LBC) mRNA.  protein.     31   4.5  
AB075819-1|BAB85525.1| 1082|Homo sapiens KIAA1939 protein protein.     31   4.5  

>AK126042-1|BAC86409.1|  265|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44054 fis, clone TESTI4034212. ).
          Length = 265

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -3

Query: 630 NPHRGPPTPD--STKPXVPHS-ARRRFK---YS*KR*LNHYVKICEFKYYLSIKSEVLHQ 469
           NPH  PPTPD  S +P V H  A R F+   +  +  L H V +C  +        + H 
Sbjct: 21  NPHHLPPTPDQSSRRPGVSHQRAERAFELLLHHDQDALGHLVHVCVHQSCSESPQGLFHD 80

Query: 468 RH 463
            H
Sbjct: 81  AH 82


>BC057236-1|AAH57236.1|  270|Homo sapiens ATP8B4 protein protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 287 SLVFTMVSRGIASVGPNSAPVVDSAQH 207
           S++FTM S GI  + PN  P V +A+H
Sbjct: 112 SILFTMHSNGIFGIFPNQFPFVGNARH 138


>AK025125-1|BAB15072.1|  195|Homo sapiens roto-LBC) mRNA.  protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 287 SLVFTMVSRGIASVGPNSAPVVDSAQH 207
           S++FTM S GI  + PN  P V +A+H
Sbjct: 37  SILFTMHSNGIFGIFPNQFPFVGNARH 63


>AB075819-1|BAB85525.1| 1082|Homo sapiens KIAA1939 protein protein.
          Length = 1082

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 287  SLVFTMVSRGIASVGPNSAPVVDSAQH 207
            S++FTM S GI  + PN  P V +A+H
Sbjct: 924  SILFTMHSNGIFGIFPNQFPFVGNARH 950


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,059,297
Number of Sequences: 237096
Number of extensions: 1768056
Number of successful extensions: 3466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3466
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)