Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5242
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.61 
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    23   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   5.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 GPNSAPVVDSAQHYSFH 195
           GP+S P+V+S  H+  H
Sbjct: 157 GPDSPPLVESQMHHQMH 173


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 260 GIASVGPNSAPVVDSAQHYSFHFGACLKHRSSFSSNPSLATKGSTSKLT 114
           G A  G N  P   S QH  F FG   ++++ F    S   +G   +L+
Sbjct: 72  GDAYGGLNIRPGQPSRQHAGFEFGK--EYKNGFIKGQSEVQRGPGGRLS 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 39  AESTTGSETQPTEKIRRETQ 98
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 561 TFGAHCAVPXVSWSPEWVGLD 623
           TF     V  +SW   W+GLD
Sbjct: 206 TFAPSTLVVMLSWFSFWLGLD 226


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 391 LLQNQLKFNYLILNYVF*VKRDSAVITVLWI 299
           +L+NQ    ++ILNYV     DS +  +L++
Sbjct: 783 ILENQNIITHMILNYV--GSEDSVIPRILYL 811


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 600 STKPXVPHSARRRFKYS*KR*LNHYVKICEFKYYL 496
           S +P +  S    +KYS     N+Y K   +K Y+
Sbjct: 76  SKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKNYI 110


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 136 FVASDGFDENDDRCLRQAPK 195
           F+ SD  + +DD  L + PK
Sbjct: 105 FILSDKLESSDDTSLFRGPK 124


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 574 CAPKVQIFMKTVIEPLRQNL 515
           C P  Q+   T++ P+R+ L
Sbjct: 795 CVPVPQVNDSTILSPVREKL 814


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,963
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)