Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5241
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    27   1.6  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   5.0  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   8.7  

>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 202 FGLFAKIYPLFYCSAKEKKKICR 134
           FG+ AK++PLF  S  E +K+ R
Sbjct: 133 FGIQAKLFPLFQGSINENEKLSR 155


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 115 LFGVPRHDKSFFFLSRSSRI--ADIFLQISRKVRKVRLA 225
           L G+P+HDKS+ +L     +  A + L     +RKV  A
Sbjct: 628 LAGLPKHDKSYVYLETLDHLCTAMVDLLSDPSIRKVTTA 666


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 190 QISRKVRKVRLAYFHFKTLQRRF 258
           +I+ K+R V++AY  F +L+ R+
Sbjct: 116 RIASKIRTVQVAYLDFTSLESRY 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,440
Number of Sequences: 5004
Number of extensions: 45138
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)