Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5241
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496...    31   0.94 
03_02_0292 + 7151885-7152613                                           29   2.2  
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797           29   2.9  
02_05_0979 + 33268294-33269595                                         28   5.0  
11_06_0100 - 20076728-20077013,20077305-20077513                       27   8.8  
09_02_0155 - 5066379-5068385                                           27   8.8  

>02_05_1147 -
           34447519-34448042,34448126-34449092,34449458-34449657,
           34449867-34450051,34450130-34450228,34450316-34450357,
           34450516-34450860,34450956-34451101,34451213-34451296,
           34451424-34451502,34451596-34451675,34451824-34451875,
           34451992-34452026
          Length = 945

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 125 TPNRNEGAYYKNINFKFYSRYKENNYSGIH 36
           TPNR    Y ++ N + YSR +E+ Y G H
Sbjct: 215 TPNREGDRYSRDSNEQRYSRDREDEYKGSH 244


>03_02_0292 + 7151885-7152613
          Length = 242

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 525 SINKVRARVDLYHSKITFNNDQTVMKFVPGRARNAIMNRVHVHV 394
           S  + R  V+L+  ++  N   T+  F+PGR+ NAI NR + H+
Sbjct: 83  SAGEDRKIVELH--RVHGNRWATIAAFLPGRSDNAIKNRWNTHL 124


>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
          Length = 918

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 220 NVPFSLFGLFAKIYPLFYCSAKEKKKICRVVGH 122
           N   S FG+  +IY LF CS K  K     V H
Sbjct: 545 NKAISFFGVIQRIYTLFSCSTKRWKIFLENVPH 577


>02_05_0979 + 33268294-33269595
          Length = 433

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 181 YPLFYCSAKEKKKICRVVGHRIGTKVLII-KILILN 77
           Y L YCSA  + K+ RVVG R  +   ++ ++L L+
Sbjct: 165 YGLGYCSATRRHKVVRVVGCRCCSPATVVWEVLALD 200


>11_06_0100 - 20076728-20077013,20077305-20077513
          Length = 164

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 200 RLICKNISAILLLRERKKKDLSCR-GTPNRNEGA 102
           RL+C+ I AI+  R + +KD++ + G   R  GA
Sbjct: 42  RLLCRCIDAIIAGRRQDRKDVTAKMGCKGRRRGA 75


>09_02_0155 - 5066379-5068385
          Length = 668

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 131 RGTPNRNEGAYYKNINFKFYSRYKENNYSGIHFLV 27
           R +PN    ++  N  F   S Y + +Y G+ FL+
Sbjct: 73  RSSPNSTVQSFSVNFMFAIQSFYSDRSYDGMAFLI 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,842,445
Number of Sequences: 37544
Number of extensions: 220162
Number of successful extensions: 495
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)