Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5234
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    27   0.67 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   2.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    23   8.3  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    23   8.3  

>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 57  SEKIPSILPTTRCTTVLL 110
           S K+P+++PTTRC   LL
Sbjct: 53  SAKLPTVIPTTRCRLRLL 70


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 56  IRENTFYITYNTMHYSIINKL 118
           IR NTF  T++T  Y +IN L
Sbjct: 525 IRSNTFSPTFDTTIYVVINSL 545


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 65  NTFYITYNTMHYSIINKLTRHKTND*QIYENSIMRETRDQY*ALW 199
           N+  I++      I+ KL+  K ND  I+ + I  +  D    LW
Sbjct: 525 NSERISHTLELQDILVKLSTPKNNDVFIFSSKITNKLNDDQSKLW 569


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 253 VTRNALSQVTPGCCAGSPPQSLVLIA 176
           +T+N LS   P C  G  P  L+L A
Sbjct: 469 LTKNRLSLGEPYCVEGVSPDDLMLTA 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,627
Number of Sequences: 5004
Number of extensions: 18725
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)