Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5234
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311     27   4.1  
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749...    26   5.4  
08_02_0288 + 15352104-15352294,15352806-15352831,15352890-153530...    26   7.1  
01_01_1119 + 8882481-8882687,8882793-8882933,8883024-8883143,888...    26   7.1  
01_07_0357 + 43032552-43033034,43034054-43034383,43035210-430353...    25   9.4  
01_05_0709 + 24480660-24481796                                         25   9.4  
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225...    25   9.4  

>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
          Length = 901

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 310 GTKIV-LACHTKCVMRLIAHVTRNALSQVTPGCCAGSPPQSLVLIARFSHY*IFI 149
           G K++ L C++ C+ RL+ H           GCC G   + + L+    H  I++
Sbjct: 731 GEKLMDLLCYSPCLQRLVIH-----------GCCIGLLSKQMTLLVNLRHLEIWV 774


>01_06_0129 -
           26770543-26770720,26774592-26774719,26774829-26774933,
           26775661-26775788,26777332-26777433,26778760-26778861,
           26779777-26779852,26779971-26780059,26780177-26780230,
           26780482-26780614,26780671-26780797,26781590-26781648
          Length = 426

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 83  YNTMHYSIINKLTRHKTND*QIYENSIMRETRDQY*ALW 199
           +N + YS    LT  KT     + NS +RETR++   LW
Sbjct: 41  HNLLDYSTEKPLTSVKT----FFNNSPVRETREKQVQLW 75


>08_02_0288 +
           15352104-15352294,15352806-15352831,15352890-15353074,
           15353850-15353896,15354224-15354269
          Length = 164

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 241 ALSQVTPGCCAGSPPQSLVLIARFS 167
           A++ +TP CC G+    L+   RFS
Sbjct: 4   AVAWLTPQCCIGAGSAILIFYTRFS 28


>01_01_1119 +
           8882481-8882687,8882793-8882933,8883024-8883143,
           8883789-8883884,8884076-8884189
          Length = 225

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
 Frame = -2

Query: 304 KIVLACHTKCVMRLIAHVTRNALSQVTPGCCAGSPPQSLVLIARFSHY*IFIYLLVVCFV 125
           + V A H    + L      +    ++P   A SPPQ   L    S+    +Y    C++
Sbjct: 33  RAVSAAHAAAAVSLACLSVADWSRPLSPLAAASSPPQMKALAVTLSY---MVYDAACCYL 89

Query: 124 PR*F-VNNTVVH--RVVGNIEGI-FSDCFAQLV 38
                V+NTV H   +VG   G+ +  C  ++V
Sbjct: 90  NDDVRVDNTVHHLVSIVGIAAGLAYRRCGTEMV 122


>01_07_0357 +
           43032552-43033034,43034054-43034383,43035210-43035325,
           43035589-43035679,43035790-43035860,43036202-43036258,
           43036809-43036860,43037139-43037170,43037686-43037753,
           43038148-43038353
          Length = 501

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 192 LCGGLPAQQPGVTCDNAFRVTCAIRRITHFV 284
           +C G P +  GVT  N  RV  +++ I  +V
Sbjct: 130 ICVGTPVRIRGVTVGNVVRVDSSLKSIDAYV 160


>01_05_0709 + 24480660-24481796
          Length = 378

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 296 ASMSHEMRYAPDCACHTKCVIA 231
           AS + E + APDCA +T CV+A
Sbjct: 258 ASAAAEGKSAPDCATYT-CVVA 278


>01_01_0272 -
           2249662-2249721,2250110-2250335,2250419-2250615,
           2250707-2250955,2251047-2251176,2251473-2251564,
           2251735-2251855,2251940-2252028,2252149-2252271,
           2252379-2252506,2253039-2253147,2253701-2254000
          Length = 607

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 77  ITYNTMHYSIINKLTRHKTND*QIYENS 160
           ITY+++H  I+N +    TND  +Y  S
Sbjct: 236 ITYDSVHSCILNSMKFDTTNDGLLYTAS 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,324,200
Number of Sequences: 37544
Number of extensions: 116223
Number of successful extensions: 277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)