Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5234
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to i...    29   0.93 
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    27   2.8  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    27   2.8  
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    26   6.6  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    26   6.6  

>U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 19 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 4   LRTHDWSLLDITLIERNNPRKYLLYYLQHDALQYY*QINEAQNKRLTNI*KFNN 165
           L+T     +D+    R+N   Y+L + Q++  +YY + + A      NI  +NN
Sbjct: 214 LKTDTLQKVDLLSASRSNLLSYVLTHYQNELYEYYSKTSRAFETLAENINCYNN 267


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 51   KQSEKIPSILPTTRCTTVLLTN*RGTKQTTNK 146
            K SE++P + PTT   T  L   + TKQ  NK
Sbjct: 1294 KISEEVPKVAPTTARPTSELVTVQITKQRLNK 1325


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 51   KQSEKIPSILPTTRCTTVLLTN*RGTKQTTNK 146
            K SE++P + PTT   T  L   + TKQ  NK
Sbjct: 1294 KISEEVPKVAPTTARPTSELVTVQITKQRLNK 1325


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 120  RGTKQTTNKYMKIQ**EKRAISTRL 194
            R T+ TTNK  KI   EKRA + R+
Sbjct: 936  RSTRSTTNKQRKIAENEKRASTPRV 960


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 120  RGTKQTTNKYMKIQ**EKRAISTRL 194
            R T+ TTNK  KI   EKRA + R+
Sbjct: 936  RSTRSTTNKQRKIAENEKRASTPRV 960


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,573,339
Number of Sequences: 27780
Number of extensions: 110132
Number of successful extensions: 293
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)