Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5234
         (314 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.22 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.29 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   2.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   6.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   6.2  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 0.22
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 208 RRSSPASPAITHFV*HAQSGA*RISCDMLARFWFP 312
           R  SP  PA   +    Q  A  I  D ++RF+FP
Sbjct: 334 RNRSPVRPATVQYDTCCQGRATAIYIDKVSRFFFP 368


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.29
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 13  HDWSLLDITLIERNNPRKYLLYYLQHDALQ 102
           H W  + I     NN  KY  YY+  D ++
Sbjct: 127 HKWFQMSINNTNNNNTNKYKDYYIWVDPVK 156


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 295 LACHTKCVMRLI 260
           L C+T C+M+L+
Sbjct: 65  LQCYTTCIMKLL 76


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 289 CHTKCVMRLIAHVTRNALSQV 227
           CH +C+ RL   +   A  +V
Sbjct: 481 CHARCIARLALDMMDLAADEV 501



 Score = 19.8 bits (39), Expect = 8.1
 Identities = 4/8 (50%), Positives = 6/8 (75%)
 Frame = -1

Query: 260 CACHTKCV 237
           C CH +C+
Sbjct: 479 CRCHARCI 486


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 289 CHTKCVMRLIAHVTRNALSQV 227
           CH +C+ RL   +   A  +V
Sbjct: 481 CHARCIARLALDMMDLAADEV 501



 Score = 19.8 bits (39), Expect = 8.1
 Identities = 4/8 (50%), Positives = 6/8 (75%)
 Frame = -1

Query: 260 CACHTKCV 237
           C CH +C+
Sbjct: 479 CRCHARCI 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,033
Number of Sequences: 438
Number of extensions: 1346
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)