Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5233
         (441 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2514|AAF53406.2| 1025|Drosophila melanogaster CG12636-P...    30   1.6  
AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p pro...    29   2.8  
AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.      29   2.8  
AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA...    29   2.8  

>AE014134-2514|AAF53406.2| 1025|Drosophila melanogaster CG12636-PA
           protein.
          Length = 1025

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 413 HQLYWKHPQPNQKKLNYLIVHTF 345
           H +YW +P P   K + LIVH +
Sbjct: 459 HNIYWWYPDPFPSKTSVLIVHAY 481


>AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p
           protein.
          Length = 818

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 141 ELCLKIEIVVDNDDECGDHSYVCPHREITASKPFAL 248
           E+ LK       +     H Y CPH   TASK F +
Sbjct: 274 EVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFLI 309


>AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.
          Length = 818

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 141 ELCLKIEIVVDNDDECGDHSYVCPHREITASKPFAL 248
           E+ LK       +     H Y CPH   TASK F +
Sbjct: 274 EVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFLI 309


>AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA
           protein.
          Length = 818

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 141 ELCLKIEIVVDNDDECGDHSYVCPHREITASKPFAL 248
           E+ LK       +     H Y CPH   TASK F +
Sbjct: 274 EVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFLI 309


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,392,395
Number of Sequences: 53049
Number of extensions: 292227
Number of successful extensions: 648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1417837128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)