Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5230
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    29   0.56 
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   1.7  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    27   3.0  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   5.2  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   6.9  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    25   6.9  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   9.1  

>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 500 PTRPAHIQHIPSLTLHLKLVRPSNVCN*LNYSCF 601
           PTR  HIQ IPS T+ LK  R  +    + Y C+
Sbjct: 462 PTRELHIQDIPSETVTLK--RARSEAEKIEYDCY 493


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 564 GLTSFKCRVRLGICCMCAG 508
           G+T FK R+ L +CC  +G
Sbjct: 203 GITRFKARITLTVCCNASG 221


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -2

Query: 626 YSGSQRDHKNKNSLINCIRSMASPVLSVE*DLEYAVCVLGASGVRPVRFHTKCRGIID 453
           ++ S R  K   + I CI  MA+ V   E DL+  V   G + +R +    + R +ID
Sbjct: 409 HTPSVRPSKKDPTGITCIVPMATHVDQTEHDLDILVTEQGLADLRGLSPTERAREVID 466


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 422 GSKVQVHWVNYQ*CPCI*YGSARAVLPTRPAHIQHIPSLTLHLKLVRPSNVCN*LNYSC 598
           G    VH  +   C  + + + +  + T P+ +  IPSL L L +  PS V +   + C
Sbjct: 555 GFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVVGHESGWGC 613


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/36 (22%), Positives = 16/36 (44%)
 Frame = -1

Query: 402 WDDVGDGIPVVLSMYSDHHLTPGSCGILLLVSYYFF 295
           W ++ D +  +  MY DH         L++   Y++
Sbjct: 45  WPEISDDVTKIEVMYEDHSFPERELAALVVSKVYYY 80


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 387 DGIPVVLSMYSDHHLTPGS 331
           +GI  VLS  S+ H+TPGS
Sbjct: 166 NGIDAVLSSSSNGHVTPGS 184


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 39  QKQMSEFLSSLL*KCHPFNPLFQ 107
           Q+++SE  +  L   HPF P+F+
Sbjct: 84  QRELSEIYNKCLKALHPFYPVFE 106


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 90  RDDIFKVKSSKIHSFVSDQEP 28
           RD I  V++SK HS V   EP
Sbjct: 194 RDKILDVQASKFHSVVLTDEP 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,003
Number of Sequences: 5004
Number of extensions: 49405
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)