Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5230
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0095 - 22775340-22776017                                         29   2.3  
02_05_0552 - 29911280-29912541,29912633-29912762                       29   2.3  
06_01_1054 - 8400422-8400586,8400983-8401159                           28   5.4  
01_06_1431 + 37317248-37317907                                         28   5.4  
01_06_1420 + 37229111-37229601,37229682-37230084                       28   5.4  
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499     28   7.1  

>04_04_0095 - 22775340-22776017
          Length = 225

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 467 RGIIDNLPNAPEPLTPCPSSHRGTTWVTASPLC 369
           RG +    NA   +TP P+S  G+TW+  SP C
Sbjct: 125 RGELACQDNAAAAVTPAPASS-GSTWLRLSPAC 156


>02_05_0552 - 29911280-29912541,29912633-29912762
          Length = 463

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = +2

Query: 356 EYIDSTTGMPSPTSSHGEMTDTGSKVQVHWVNYQ*CP---CI*YGSARAVL-PTRPAHIQ 523
           EY+ S  G+ +P  +     DTGS V   WV    CP   C  Y    A+  P + +  +
Sbjct: 126 EYVISV-GLGTPAVTQTVTIDTGSDVS--WVQCNPCPNPPC--YAQTGALFDPAKSSTYR 180

Query: 524 HIPSLTLHL-KLVRPSNVCN*LNYSCFYGL 610
            +        +L +  N C   NY C YG+
Sbjct: 181 AVSCAAAECAQLEQQGNGCGATNYECQYGV 210


>06_01_1054 - 8400422-8400586,8400983-8401159
          Length = 113

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 473 KCRGIIDNLPNAPEPLTPCPSSHRGTT 393
           KCR +  NLP   + L+ C +SHR TT
Sbjct: 81  KCRVVAPNLPKKTDDLSHC-ASHRWTT 106


>01_06_1431 + 37317248-37317907
          Length = 219

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 464 GIIDNLPNAPEPLTPCPSSHRGTTWVTASP 375
           GI+D LP    P +P PSS   ++  TASP
Sbjct: 81  GILDALPERRSPFSPPPSSSSNSS-TTASP 109


>01_06_1420 + 37229111-37229601,37229682-37230084
          Length = 297

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 326 PQLPGVR*WSEYIDSTTGMPSPTSSH 403
           P+  GV  WS+Y D  TG  S   SH
Sbjct: 271 PKYGGVMLWSKYYDDQTGYSSAIKSH 296


>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
          Length = 524

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -2

Query: 464 GIIDNLPNAPEPLTPCPSSHRGTTWVTASPLCCRCTLTI 348
           G++ +L N P PLT       GTT  TAS L  R  LTI
Sbjct: 216 GLLHSLRNVPYPLTWIVVEAGGTTNATAS-LLARSDLTI 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,093,872
Number of Sequences: 37544
Number of extensions: 332724
Number of successful extensions: 842
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)