Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5230
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF047662-4|AAC04444.1|  145|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -2

Query: 452 NLPNAPEPLTPCPSSHRGTTWVTA-SPLCC-----RCTLTIT 345
           N P    P +PCPSSH     +T  + +CC      C LT+T
Sbjct: 530 NEPRTCSPSSPCPSSHWCHVGITPDTTVCCSAVQNTCELTMT 571


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -2

Query: 419 CPSSHRGTTW---VTASPLCCRCTLTIT*RQAAVGSCC*YPTTSFQIYFIYYLKY 264
           C  + +G  W   +   P+C R ++     Q A+G C    T  F+I+F  + K+
Sbjct: 799 CQWTSKGRCWLPLIDVEPICTRLSIL----QGALGKCLRNKTLLFEIWFSQFWKF 849


>AF047662-4|AAC04444.1|  145|Caenorhabditis elegans Hypothetical
           protein T22B2.6 protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 455 DNLPNAPEPLTPCPSSHRGTTWVTASPLCCRCTLTIT 345
           D+LP  P    P P     TT      + C+C + IT
Sbjct: 77  DDLPTPPPETVPTPVPEVPTTTTPTDVVPCKCLIKIT 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,874,354
Number of Sequences: 27780
Number of extensions: 284751
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)