Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5228
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0290 - 23879064-23880035                                         31   0.80 
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392...    31   1.4  
07_01_1088 + 9995442-9997736                                           29   3.2  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    29   4.3  
11_01_0337 - 2519732-2521093                                           29   5.6  
07_01_0013 - 99952-100413,100534-100704                                29   5.6  
02_05_0632 + 30490575-30490808,30490898-30491173,30491287-30491352     29   5.6  

>05_05_0290 - 23879064-23880035
          Length = 323

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 24/87 (27%), Positives = 35/87 (40%)
 Frame = +1

Query: 232 WLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIWTSGRLCDFKGCNRPDLLPNE 411
           WL   + C     +L S ET D NE      V+D  + +   G     +  NRP  +   
Sbjct: 229 WLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNRPWAIVPW 288

Query: 412 INGWFWTAELQKLAPTTNRQQNDWSEG 492
           +N  F T E Q     +  QQ+  + G
Sbjct: 289 LNELFSTREAQNAGGVSTDQQSPHTSG 315


>03_01_0522 -
           3919120-3919696,3919835-3919919,3919955-3919985,
           3920078-3920158,3920271-3920338,3920645-3920698,
           3921023-3922379
          Length = 750

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 542 PPCISSRLSGCGFPMPPPSDQSFC 471
           PP  S + S CG  +PP S Q FC
Sbjct: 615 PPRPSQQFSACGTMLPPSSSQPFC 638


>07_01_1088 + 9995442-9997736
          Length = 764

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/60 (21%), Positives = 27/60 (45%)
 Frame = +1

Query: 544 ASEHCVAILNNFYNDGVHWHDVACHHRKPFVCEENDALLKYVRYTNPNLRV*LSMTSLYT 723
           A+  C+   +   N    W + + HH+    C E    + Y+ + NP + +  +  +L+T
Sbjct: 519 ATTMCIERSSGLNNRCPTWCEKSIHHKNAVQCREMSNYMTYLLFVNPEMLMPGTRRNLFT 578


>01_01_0588 +
           4372877-4372949,4374328-4376262,4376940-4377015,
           4378900-4378970,4379038-4379144,4379241-4379711,
           4379791-4379976,4380132-4380425,4380820-4381434,
           4382219-4382615,4382768-4382850,4383397-4383567,
           4384046-4384243,4384754-4385314,4385401-4385460,
           4385553-4385869,4385980-4386403,4386539-4387006,
           4387093-4387209,4387306-4387427,4387506-4388247,
           4388453-4388485,4388625-4388879,4388975-4389160,
           4390115-4390453,4391293-4392045
          Length = 3017

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 677 VYLTYLRRASFSSQTNGLRWWQATS 603
           V L  +  +SFSS  NG+++WQ TS
Sbjct: 597 VVLPSISVSSFSSHNNGIKFWQPTS 621


>11_01_0337 - 2519732-2521093
          Length = 453

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 583 NDGVHWHDVACHHRKPFVCEENDALLKYVRYT 678
           N  +  HD+A HH K +    NDAL  +  +T
Sbjct: 230 NPNICCHDIAFHHGKLYSINNNDALFVHEFFT 261


>07_01_0013 - 99952-100413,100534-100704
          Length = 210

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 457 TTNRQQNDWSEGGGIGKPQPDNRELIQGGASEHCVAI 567
           TTNR       G G G+ Q  +R+ +QGG    C  I
Sbjct: 3   TTNRMLATKPRGDGKGREQGPSRQRLQGGHYAFCTTI 39


>02_05_0632 + 30490575-30490808,30490898-30491173,30491287-30491352
          Length = 191

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 563 ATQCSEAPPCISSRLSGCGFPMPPPS 486
           AT CS AP    +RL   G  +PPPS
Sbjct: 3   ATACSTAPLLGGARLPAVGAALPPPS 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,962,023
Number of Sequences: 37544
Number of extensions: 524947
Number of successful extensions: 1653
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)